Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06340

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,555,810	-				-0.4
1,555,838	-				-0.9
1,555,882	+				+0.9
1,555,896	-				-2.3
1,555,936	-				-0.7
1,556,043	-		CA265_RS06335	0.23	+0.6
1,556,210	+		CA265_RS06335	0.58	-0.7
1,556,239	+		CA265_RS06335	0.64	+0.9
1,556,240	-		CA265_RS06335	0.65	+1.3
1,556,245	+		CA265_RS06335	0.66	-0.3
1,556,266	+		CA265_RS06335	0.70	+0.4
1,556,266	+		CA265_RS06335	0.70	-0.5
1,556,266	+		CA265_RS06335	0.70	-0.1
1,556,297	-		CA265_RS06335	0.77	+1.1
1,556,297	-		CA265_RS06335	0.77	+0.6
1,556,312	-		CA265_RS06335	0.80	-2.4
1,556,312	-		CA265_RS06335	0.80	+0.7
1,556,349	-		CA265_RS06335	0.88	+1.0
1,556,422	-				-1.4
1,556,422	-				-0.7
1,556,432	-				+0.2
1,556,471	-				-0.8
1,556,514	+				-0.9
1,556,515	-				-0.2
1,556,520	+				-2.5
1,556,651	-				-1.5
1,556,651	-				+0.5
1,556,651	-				+0.4
1,556,656	-				+0.7
1,556,741	-				+0.6
1,556,793	+				-1.2
1,556,803	+				+0.6
1,556,804	-				-0.5
1,556,807	+				-2.6
1,556,808	-				+0.7
1,556,857	+				-0.1
1,556,857	+				+1.5
1,556,857	+				-0.9
1,556,857	+				-0.1
1,556,858	-				-0.6
1,556,858	-				-0.3
1,556,861	+				-0.8
1,557,014	+		CA265_RS06340	0.24	+0.5
1,557,101	+		CA265_RS06340	0.33	-0.1
1,557,101	+		CA265_RS06340	0.33	+0.7
1,557,115	+		CA265_RS06340	0.35	+3.2
1,557,127	+		CA265_RS06340	0.36	+0.6
1,557,127	+		CA265_RS06340	0.36	+0.1
1,557,130	+		CA265_RS06340	0.36	+0.4
1,557,163	-		CA265_RS06340	0.40	+0.5
1,557,168	-		CA265_RS06340	0.40	+1.1
1,557,193	+		CA265_RS06340	0.43	-1.0
1,557,242	-		CA265_RS06340	0.48	-0.1
1,557,306	+		CA265_RS06340	0.55	-0.4
1,557,366	-		CA265_RS06340	0.61	-0.9
1,557,367	+		CA265_RS06340	0.61	+0.1
1,557,367	+		CA265_RS06340	0.61	-0.6
1,557,420	-		CA265_RS06340	0.66	+0.0
1,557,421	+		CA265_RS06340	0.67	-2.0
1,557,421	+		CA265_RS06340	0.67	-0.2
1,557,453	+		CA265_RS06340	0.70	+2.4
1,557,476	+		CA265_RS06340	0.72	+0.3
1,557,481	-		CA265_RS06340	0.73	+0.2
1,557,481	-		CA265_RS06340	0.73	-1.4
1,557,528	+		CA265_RS06340	0.78	+0.1
1,557,556	+		CA265_RS06340	0.81	+0.1
1,557,613	-		CA265_RS06340	0.87	+0.5
1,557,651	+				-0.6
1,557,651	+				+0.8
1,557,652	-				+0.3
1,557,652	-				+0.2
1,557,655	-				+0.6
1,557,668	-				+0.1
1,557,833	+				-0.4
1,557,833	+				+0.2
1,557,861	+		CA265_RS06345	0.13	-1.5
1,557,908	-		CA265_RS06345	0.20	-0.6
1,557,974	-		CA265_RS06345	0.30	-0.8
1,557,982	-		CA265_RS06345	0.31	-0.9
1,557,995	+		CA265_RS06345	0.33	+0.1
1,558,036	-		CA265_RS06345	0.40	+0.1
1,558,039	-		CA265_RS06345	0.40	+0.6
1,558,047	+		CA265_RS06345	0.41	-2.3
1,558,053	+		CA265_RS06345	0.42	-0.5
1,558,084	+		CA265_RS06345	0.47	-0.2
1,558,086	+		CA265_RS06345	0.47	-0.2
1,558,087	-		CA265_RS06345	0.47	-0.9
1,558,091	-		CA265_RS06345	0.48	-0.0
1,558,105	+		CA265_RS06345	0.50	+1.1
1,558,111	-		CA265_RS06345	0.51	-0.7
1,558,113	+		CA265_RS06345	0.51	-0.3
1,558,171	+				+0.4
1,558,172	-		CA265_RS06345	0.60	+0.6
1,558,208	-		CA265_RS06345	0.66	-0.3
1,558,208	-		CA265_RS06345	0.66	-1.6
1,558,252	-		CA265_RS06345	0.72	+0.6
1,558,280	+		CA265_RS06345	0.77	-0.1
1,558,282	+		CA265_RS06345	0.77	-0.6
1,558,350	+		CA265_RS06345	0.87	-1.4
1,558,362	+		CA265_RS06345	0.89	-0.9
1,558,370	+				+0.2
1,558,374	+				+0.0
1,558,430	+				+0.2
1,558,626	+		CA265_RS06350	0.29	+0.4
1,558,640	+		CA265_RS06350	0.31	+0.6
1,558,674	-		CA265_RS06350	0.35	-0.5
1,558,695	+		CA265_RS06350	0.38	-1.0
1,558,704	-		CA265_RS06350	0.39	+0.7