Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02160

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02150 and CA265_RS02155 are separated by 86 nucleotidesCA265_RS02155 and CA265_RS02160 are separated by 22 nucleotidesCA265_RS02160 and CA265_RS02165 are separated by 40 nucleotides CA265_RS02150: CA265_RS02150 - hypothetical protein, at 544,227 to 546,386 _RS02150 CA265_RS02155: CA265_RS02155 - hypothetical protein, at 546,473 to 547,144 _RS02155 CA265_RS02160: CA265_RS02160 - hypothetical protein, at 547,167 to 548,108 _RS02160 CA265_RS02165: CA265_RS02165 - hypothetical protein, at 548,149 to 549,120 _RS02165 Position (kb) 547 548 549Strain fitness (log2 ratio) -2 -1 0 1at 546.243 kb on - strandat 546.279 kb on + strandat 546.280 kb on - strandat 546.373 kb on + strandat 546.378 kb on - strandat 546.378 kb on - strandat 546.385 kb on - strandat 546.418 kb on + strandat 546.453 kb on + strandat 546.465 kb on + strandat 546.465 kb on + strandat 546.482 kb on - strandat 546.517 kb on - strandat 546.519 kb on - strandat 546.567 kb on - strand, within CA265_RS02155at 546.586 kb on + strand, within CA265_RS02155at 546.631 kb on - strand, within CA265_RS02155at 546.632 kb on + strand, within CA265_RS02155at 546.633 kb on - strand, within CA265_RS02155at 546.633 kb on - strand, within CA265_RS02155at 546.692 kb on + strand, within CA265_RS02155at 546.693 kb on - strand, within CA265_RS02155at 546.748 kb on + strand, within CA265_RS02155at 546.749 kb on - strand, within CA265_RS02155at 546.779 kb on - strand, within CA265_RS02155at 546.779 kb on - strand, within CA265_RS02155at 546.781 kb on + strand, within CA265_RS02155at 546.842 kb on - strand, within CA265_RS02155at 546.870 kb on + strand, within CA265_RS02155at 546.893 kb on + strand, within CA265_RS02155at 546.893 kb on + strand, within CA265_RS02155at 546.894 kb on - strand, within CA265_RS02155at 546.912 kb on + strand, within CA265_RS02155at 546.913 kb on - strand, within CA265_RS02155at 546.928 kb on - strand, within CA265_RS02155at 547.007 kb on + strand, within CA265_RS02155at 547.102 kb on + strandat 547.117 kb on + strandat 547.126 kb on + strandat 547.126 kb on + strandat 547.127 kb on - strandat 547.142 kb on + strandat 547.149 kb on + strandat 547.193 kb on - strandat 547.256 kb on + strandat 547.347 kb on - strand, within CA265_RS02160at 547.372 kb on - strand, within CA265_RS02160at 547.398 kb on - strand, within CA265_RS02160at 547.398 kb on - strand, within CA265_RS02160at 547.403 kb on + strand, within CA265_RS02160at 547.404 kb on - strand, within CA265_RS02160at 547.407 kb on - strand, within CA265_RS02160at 547.457 kb on - strand, within CA265_RS02160at 547.520 kb on - strand, within CA265_RS02160at 547.538 kb on + strand, within CA265_RS02160at 547.539 kb on - strand, within CA265_RS02160at 547.563 kb on - strand, within CA265_RS02160at 547.589 kb on - strand, within CA265_RS02160at 547.648 kb on + strand, within CA265_RS02160at 547.653 kb on - strand, within CA265_RS02160at 547.724 kb on - strand, within CA265_RS02160at 547.741 kb on + strand, within CA265_RS02160at 547.742 kb on - strand, within CA265_RS02160at 547.821 kb on - strand, within CA265_RS02160at 547.823 kb on - strand, within CA265_RS02160at 547.868 kb on - strand, within CA265_RS02160at 547.926 kb on + strand, within CA265_RS02160at 547.949 kb on + strand, within CA265_RS02160at 547.989 kb on + strand, within CA265_RS02160at 547.990 kb on - strand, within CA265_RS02160at 547.993 kb on + strand, within CA265_RS02160at 548.021 kb on - strandat 548.037 kb on + strandat 548.037 kb on + strandat 548.046 kb on - strandat 548.046 kb on - strandat 548.088 kb on + strandat 548.106 kb on + strandat 548.138 kb on - strandat 548.142 kb on + strandat 548.144 kb on + strandat 548.144 kb on + strandat 548.145 kb on - strandat 548.174 kb on + strandat 548.175 kb on - strandat 548.232 kb on + strandat 548.232 kb on + strandat 548.233 kb on - strandat 548.288 kb on - strand, within CA265_RS02165at 548.441 kb on + strand, within CA265_RS02165at 548.513 kb on + strand, within CA265_RS02165at 548.617 kb on - strand, within CA265_RS02165at 548.627 kb on + strand, within CA265_RS02165at 548.628 kb on - strand, within CA265_RS02165at 548.679 kb on + strand, within CA265_RS02165at 548.679 kb on + strand, within CA265_RS02165at 548.687 kb on - strand, within CA265_RS02165at 548.687 kb on - strand, within CA265_RS02165at 548.721 kb on + strand, within CA265_RS02165at 548.743 kb on + strand, within CA265_RS02165at 548.743 kb on + strand, within CA265_RS02165at 548.785 kb on - strand, within CA265_RS02165at 548.927 kb on + strand, within CA265_RS02165at 548.927 kb on + strand, within CA265_RS02165at 548.928 kb on - strand, within CA265_RS02165at 549.011 kb on - strand, within CA265_RS02165at 549.036 kb on + strandat 549.062 kb on + strandat 549.073 kb on + strandat 549.076 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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546,243 - +0.7
546,279 + +0.1
546,280 - +0.5
546,373 + +1.2
546,378 - -0.7
546,378 - -1.0
546,385 - -0.1
546,418 + +0.1
546,453 + +0.8
546,465 + -0.2
546,465 + +0.8
546,482 - +0.2
546,517 - -1.9
546,519 - +0.3
546,567 - CA265_RS02155 0.14 +0.2
546,586 + CA265_RS02155 0.17 -1.3
546,631 - CA265_RS02155 0.24 -2.6
546,632 + CA265_RS02155 0.24 +0.2
546,633 - CA265_RS02155 0.24 +0.7
546,633 - CA265_RS02155 0.24 -0.3
546,692 + CA265_RS02155 0.33 +0.3
546,693 - CA265_RS02155 0.33 -0.4
546,748 + CA265_RS02155 0.41 +0.7
546,749 - CA265_RS02155 0.41 -1.3
546,779 - CA265_RS02155 0.46 -0.4
546,779 - CA265_RS02155 0.46 -1.0
546,781 + CA265_RS02155 0.46 -0.3
546,842 - CA265_RS02155 0.55 -0.8
546,870 + CA265_RS02155 0.59 -0.1
546,893 + CA265_RS02155 0.62 -1.1
546,893 + CA265_RS02155 0.62 +0.3
546,894 - CA265_RS02155 0.63 -0.5
546,912 + CA265_RS02155 0.65 -1.1
546,913 - CA265_RS02155 0.65 +0.5
546,928 - CA265_RS02155 0.68 -0.9
547,007 + CA265_RS02155 0.79 +0.6
547,102 + -0.4
547,117 + -0.1
547,126 + -1.7
547,126 + -1.0
547,127 - +0.8
547,142 + -0.5
547,149 + -0.5
547,193 - -0.3
547,256 + -0.4
547,347 - CA265_RS02160 0.19 +0.3
547,372 - CA265_RS02160 0.22 -0.0
547,398 - CA265_RS02160 0.25 +0.7
547,398 - CA265_RS02160 0.25 +0.3
547,403 + CA265_RS02160 0.25 -0.1
547,404 - CA265_RS02160 0.25 -0.6
547,407 - CA265_RS02160 0.25 +0.1
547,457 - CA265_RS02160 0.31 +0.4
547,520 - CA265_RS02160 0.37 -0.3
547,538 + CA265_RS02160 0.39 +1.1
547,539 - CA265_RS02160 0.39 +0.8
547,563 - CA265_RS02160 0.42 +0.6
547,589 - CA265_RS02160 0.45 -0.6
547,648 + CA265_RS02160 0.51 -0.1
547,653 - CA265_RS02160 0.52 +0.1
547,724 - CA265_RS02160 0.59 +0.8
547,741 + CA265_RS02160 0.61 -0.1
547,742 - CA265_RS02160 0.61 +0.6
547,821 - CA265_RS02160 0.69 +1.4
547,823 - CA265_RS02160 0.70 +1.2
547,868 - CA265_RS02160 0.74 +0.7
547,926 + CA265_RS02160 0.81 +1.4
547,949 + CA265_RS02160 0.83 -0.1
547,989 + CA265_RS02160 0.87 +1.1
547,990 - CA265_RS02160 0.87 +0.2
547,993 + CA265_RS02160 0.88 +0.3
548,021 - +0.5
548,037 + -0.9
548,037 + +0.5
548,046 - +0.3
548,046 - +0.8
548,088 + +1.0
548,106 + -0.7
548,138 - +0.3
548,142 + -0.2
548,144 + -1.8
548,144 + +0.3
548,145 - +0.6
548,174 + -0.7
548,175 - -0.7
548,232 + -1.6
548,232 + -0.1
548,233 - +1.0
548,288 - CA265_RS02165 0.14 +0.2
548,441 + CA265_RS02165 0.30 +0.1
548,513 + CA265_RS02165 0.37 -1.2
548,617 - CA265_RS02165 0.48 -0.4
548,627 + CA265_RS02165 0.49 -0.8
548,628 - CA265_RS02165 0.49 +0.0
548,679 + CA265_RS02165 0.55 +0.9
548,679 + CA265_RS02165 0.55 +0.1
548,687 - CA265_RS02165 0.55 -0.5
548,687 - CA265_RS02165 0.55 -0.6
548,721 + CA265_RS02165 0.59 +0.1
548,743 + CA265_RS02165 0.61 +0.4
548,743 + CA265_RS02165 0.61 +0.5
548,785 - CA265_RS02165 0.65 -0.9
548,927 + CA265_RS02165 0.80 +1.6
548,927 + CA265_RS02165 0.80 +0.6
548,928 - CA265_RS02165 0.80 +0.6
549,011 - CA265_RS02165 0.89 +0.3
549,036 + +0.6
549,062 + +0.4
549,073 + +0.7
549,076 + +0.3

Or see this region's nucleotide sequence