Experiment: R2A with nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02025 and CA265_RS02030 are separated by 262 nucleotides CA265_RS02030 and CA265_RS02035 are separated by 309 nucleotides
CA265_RS02025: CA265_RS02025 - 8-amino-7-oxononanoate synthase, at 513,976 to 515,217
_RS02025
CA265_RS02030: CA265_RS02030 - hypothetical protein, at 515,480 to 515,656
_RS02030
CA265_RS02035: CA265_RS02035 - hypothetical protein, at 515,966 to 516,949
_RS02035
Position (kb) 515
516 Strain fitness (log2 ratio) -2
-1
0
1 at 515.201 kb on + strand at 515.331 kb on + strand at 515.338 kb on - strand at 515.466 kb on - strand at 515.499 kb on + strand, within CA265_RS02030 at 515.578 kb on - strand, within CA265_RS02030 at 515.581 kb on + strand, within CA265_RS02030 at 515.587 kb on + strand, within CA265_RS02030 at 515.588 kb on - strand, within CA265_RS02030 at 515.607 kb on + strand, within CA265_RS02030 at 515.607 kb on + strand, within CA265_RS02030 at 515.672 kb on + strand at 515.675 kb on - strand at 515.716 kb on - strand at 515.742 kb on - strand at 515.768 kb on + strand at 515.814 kb on + strand at 515.874 kb on + strand at 515.875 kb on - strand at 515.905 kb on + strand at 515.952 kb on - strand at 515.961 kb on - strand at 515.961 kb on - strand at 515.984 kb on + strand at 515.985 kb on - strand at 516.009 kb on + strand at 516.049 kb on - strand at 516.056 kb on - strand at 516.056 kb on - strand at 516.093 kb on + strand, within CA265_RS02035 at 516.094 kb on - strand, within CA265_RS02035 at 516.135 kb on + strand, within CA265_RS02035 at 516.149 kb on + strand, within CA265_RS02035 at 516.160 kb on + strand, within CA265_RS02035 at 516.212 kb on + strand at 516.213 kb on - strand, within CA265_RS02035 at 516.213 kb on - strand, within CA265_RS02035 at 516.215 kb on - strand, within CA265_RS02035 at 516.215 kb on - strand, within CA265_RS02035 at 516.244 kb on + strand, within CA265_RS02035 at 516.282 kb on - strand, within CA265_RS02035 at 516.301 kb on + strand, within CA265_RS02035 at 516.326 kb on - strand, within CA265_RS02035 at 516.326 kb on - strand, within CA265_RS02035 at 516.368 kb on + strand, within CA265_RS02035 at 516.368 kb on + strand, within CA265_RS02035 at 516.368 kb on + strand, within CA265_RS02035 at 516.370 kb on + strand, within CA265_RS02035 at 516.370 kb on + strand, within CA265_RS02035 at 516.371 kb on - strand, within CA265_RS02035 at 516.371 kb on - strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.424 kb on + strand, within CA265_RS02035 at 516.428 kb on - strand, within CA265_RS02035 at 516.461 kb on + strand, within CA265_RS02035 at 516.462 kb on - strand, within CA265_RS02035 at 516.486 kb on - strand, within CA265_RS02035 at 516.549 kb on + strand, within CA265_RS02035 at 516.626 kb on + strand, within CA265_RS02035 at 516.627 kb on - strand, within CA265_RS02035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM remove 515,201 + +0.3 515,331 + +0.7 515,338 - -0.7 515,466 - +0.0 515,499 + CA265_RS02030 0.11 -0.2 515,578 - CA265_RS02030 0.55 +0.1 515,581 + CA265_RS02030 0.57 -0.8 515,587 + CA265_RS02030 0.60 +0.0 515,588 - CA265_RS02030 0.61 -0.1 515,607 + CA265_RS02030 0.72 -1.6 515,607 + CA265_RS02030 0.72 -1.0 515,672 + -1.9 515,675 - +0.7 515,716 - +0.1 515,742 - -0.9 515,768 + -0.3 515,814 + -0.6 515,874 + -0.2 515,875 - +0.4 515,905 + -1.2 515,952 - -0.1 515,961 - -0.7 515,961 - -0.3 515,984 + -1.3 515,985 - -0.4 516,009 + -0.4 516,049 - -0.7 516,056 - -0.1 516,056 - +0.3 516,093 + CA265_RS02035 0.13 -0.2 516,094 - CA265_RS02035 0.13 -0.4 516,135 + CA265_RS02035 0.17 +0.2 516,149 + CA265_RS02035 0.19 -0.3 516,160 + CA265_RS02035 0.20 +0.6 516,212 + -0.7 516,213 - CA265_RS02035 0.25 -0.9 516,213 - CA265_RS02035 0.25 +1.7 516,215 - CA265_RS02035 0.25 +0.6 516,215 - CA265_RS02035 0.25 +0.3 516,244 + CA265_RS02035 0.28 +0.5 516,282 - CA265_RS02035 0.32 +0.1 516,301 + CA265_RS02035 0.34 -1.7 516,326 - CA265_RS02035 0.37 +0.6 516,326 - CA265_RS02035 0.37 +0.8 516,368 + CA265_RS02035 0.41 +0.1 516,368 + CA265_RS02035 0.41 +0.6 516,368 + CA265_RS02035 0.41 -1.9 516,370 + CA265_RS02035 0.41 +0.6 516,370 + CA265_RS02035 0.41 -0.3 516,371 - CA265_RS02035 0.41 +0.5 516,371 - CA265_RS02035 0.41 -1.6 516,424 + CA265_RS02035 0.47 -1.7 516,424 + CA265_RS02035 0.47 +0.6 516,424 + CA265_RS02035 0.47 +0.0 516,424 + CA265_RS02035 0.47 +0.6 516,424 + CA265_RS02035 0.47 -0.5 516,424 + CA265_RS02035 0.47 -0.0 516,424 + CA265_RS02035 0.47 +0.7 516,424 + CA265_RS02035 0.47 +0.1 516,428 - CA265_RS02035 0.47 +0.1 516,461 + CA265_RS02035 0.50 +0.0 516,462 - CA265_RS02035 0.50 -1.1 516,486 - CA265_RS02035 0.53 +0.2 516,549 + CA265_RS02035 0.59 +1.2 516,626 + CA265_RS02035 0.67 -0.7 516,627 - CA265_RS02035 0.67 +0.5
Or see this region's nucleotide sequence