Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01340

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01330 and CA265_RS01335 are separated by 32 nucleotidesCA265_RS01335 and CA265_RS01340 are separated by 147 nucleotidesCA265_RS01340 and CA265_RS01345 are separated by 57 nucleotides CA265_RS01330: CA265_RS01330 - alcohol dehydrogenase AdhP, at 335,163 to 336,197 _RS01330 CA265_RS01335: CA265_RS01335 - pyridoxamine 5'-phosphate oxidase, at 336,230 to 336,685 _RS01335 CA265_RS01340: CA265_RS01340 - hypothetical protein, at 336,833 to 338,614 _RS01340 CA265_RS01345: CA265_RS01345 - PAS domain-containing sensor histidine kinase, at 338,672 to 339,862 _RS01345 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -2 -1 0 1 2at 335.868 kb on - strand, within CA265_RS01330at 335.878 kb on + strand, within CA265_RS01330at 335.987 kb on + strand, within CA265_RS01330at 336.014 kb on - strand, within CA265_RS01330at 336.125 kb on + strandat 336.182 kb on + strandat 336.183 kb on - strandat 336.196 kb on - strandat 336.204 kb on - strandat 336.207 kb on - strandat 336.243 kb on + strandat 336.282 kb on - strand, within CA265_RS01335at 336.282 kb on - strand, within CA265_RS01335at 336.282 kb on - strand, within CA265_RS01335at 336.282 kb on - strand, within CA265_RS01335at 336.283 kb on + strand, within CA265_RS01335at 336.283 kb on + strand, within CA265_RS01335at 336.284 kb on - strand, within CA265_RS01335at 336.315 kb on + strand, within CA265_RS01335at 336.316 kb on - strand, within CA265_RS01335at 336.339 kb on - strand, within CA265_RS01335at 336.344 kb on + strand, within CA265_RS01335at 336.349 kb on + strand, within CA265_RS01335at 336.407 kb on - strand, within CA265_RS01335at 336.418 kb on - strand, within CA265_RS01335at 336.466 kb on - strand, within CA265_RS01335at 336.466 kb on - strand, within CA265_RS01335at 336.500 kb on - strand, within CA265_RS01335at 336.602 kb on - strand, within CA265_RS01335at 336.639 kb on + strand, within CA265_RS01335at 336.640 kb on - strandat 336.683 kb on + strandat 336.684 kb on - strandat 336.817 kb on + strandat 336.817 kb on + strandat 336.818 kb on - strandat 336.818 kb on - strandat 336.818 kb on - strandat 336.818 kb on - strandat 336.829 kb on + strandat 336.861 kb on + strandat 336.872 kb on + strandat 336.892 kb on + strandat 336.892 kb on + strandat 336.893 kb on - strandat 336.905 kb on + strandat 336.910 kb on + strandat 336.965 kb on + strandat 336.965 kb on + strandat 336.965 kb on + strandat 337.124 kb on - strand, within CA265_RS01340at 337.175 kb on + strand, within CA265_RS01340at 337.284 kb on + strand, within CA265_RS01340at 337.298 kb on + strand, within CA265_RS01340at 337.324 kb on + strand, within CA265_RS01340at 337.402 kb on + strand, within CA265_RS01340at 337.402 kb on + strand, within CA265_RS01340at 337.617 kb on - strand, within CA265_RS01340at 337.620 kb on + strand, within CA265_RS01340at 337.663 kb on + strand, within CA265_RS01340at 337.664 kb on - strand, within CA265_RS01340at 337.688 kb on + strand, within CA265_RS01340at 337.765 kb on - strand, within CA265_RS01340at 337.809 kb on + strand, within CA265_RS01340at 337.854 kb on + strand, within CA265_RS01340at 337.863 kb on + strand, within CA265_RS01340at 337.863 kb on + strand, within CA265_RS01340at 337.864 kb on - strand, within CA265_RS01340at 337.963 kb on + strand, within CA265_RS01340at 337.972 kb on - strand, within CA265_RS01340at 338.100 kb on + strand, within CA265_RS01340at 338.130 kb on + strand, within CA265_RS01340at 338.196 kb on + strand, within CA265_RS01340at 338.196 kb on + strand, within CA265_RS01340at 338.197 kb on - strand, within CA265_RS01340at 338.220 kb on - strand, within CA265_RS01340at 338.221 kb on + strand, within CA265_RS01340at 338.225 kb on - strand, within CA265_RS01340at 338.253 kb on + strand, within CA265_RS01340at 338.295 kb on + strand, within CA265_RS01340at 338.295 kb on + strand, within CA265_RS01340at 338.296 kb on - strand, within CA265_RS01340at 338.296 kb on - strand, within CA265_RS01340at 338.296 kb on - strand, within CA265_RS01340at 338.296 kb on - strandat 338.298 kb on - strand, within CA265_RS01340at 338.394 kb on - strand, within CA265_RS01340at 338.394 kb on - strand, within CA265_RS01340at 338.501 kb on + strandat 338.506 kb on + strandat 338.561 kb on + strandat 338.561 kb on + strandat 338.562 kb on - strandat 338.656 kb on + strandat 338.677 kb on + strandat 338.677 kb on + strandat 338.726 kb on - strandat 338.740 kb on + strandat 338.749 kb on + strandat 338.761 kb on - strandat 338.864 kb on + strand, within CA265_RS01345at 338.876 kb on + strand, within CA265_RS01345at 338.904 kb on + strand, within CA265_RS01345at 338.904 kb on + strand, within CA265_RS01345at 338.905 kb on - strand, within CA265_RS01345at 338.936 kb on - strand, within CA265_RS01345at 339.082 kb on + strand, within CA265_RS01345at 339.098 kb on - strand, within CA265_RS01345at 339.160 kb on - strand, within CA265_RS01345at 339.182 kb on - strand, within CA265_RS01345at 339.226 kb on + strand, within CA265_RS01345at 339.238 kb on + strand, within CA265_RS01345at 339.239 kb on - strand, within CA265_RS01345at 339.246 kb on + strand, within CA265_RS01345at 339.271 kb on + strand, within CA265_RS01345at 339.272 kb on - strand, within CA265_RS01345at 339.276 kb on - strand, within CA265_RS01345at 339.276 kb on - strand, within CA265_RS01345at 339.277 kb on + strand, within CA265_RS01345at 339.277 kb on + strand, within CA265_RS01345at 339.349 kb on + strand, within CA265_RS01345at 339.488 kb on - strand, within CA265_RS01345at 339.490 kb on + strand, within CA265_RS01345at 339.491 kb on - strand, within CA265_RS01345at 339.580 kb on - strand, within CA265_RS01345

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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335,868 - CA265_RS01330 0.68 -0.1
335,878 + CA265_RS01330 0.69 -0.8
335,987 + CA265_RS01330 0.80 -0.2
336,014 - CA265_RS01330 0.82 +1.7
336,125 + +1.4
336,182 + -0.6
336,183 - -0.5
336,196 - +0.1
336,204 - -1.5
336,207 - +1.2
336,243 + +0.5
336,282 - CA265_RS01335 0.11 +0.2
336,282 - CA265_RS01335 0.11 +0.4
336,282 - CA265_RS01335 0.11 +0.9
336,282 - CA265_RS01335 0.11 +0.0
336,283 + CA265_RS01335 0.12 +1.1
336,283 + CA265_RS01335 0.12 -1.4
336,284 - CA265_RS01335 0.12 +0.7
336,315 + CA265_RS01335 0.19 +0.3
336,316 - CA265_RS01335 0.19 -0.0
336,339 - CA265_RS01335 0.24 +0.5
336,344 + CA265_RS01335 0.25 -0.3
336,349 + CA265_RS01335 0.26 +0.2
336,407 - CA265_RS01335 0.39 +0.4
336,418 - CA265_RS01335 0.41 +2.3
336,466 - CA265_RS01335 0.52 +2.3
336,466 - CA265_RS01335 0.52 +0.6
336,500 - CA265_RS01335 0.59 +0.9
336,602 - CA265_RS01335 0.82 -0.9
336,639 + CA265_RS01335 0.90 +0.7
336,640 - -0.1
336,683 + +0.7
336,684 - -0.7
336,817 + +0.0
336,817 + +0.5
336,818 - +0.7
336,818 - +0.4
336,818 - -1.4
336,818 - +1.2
336,829 + +0.1
336,861 + -0.3
336,872 + +1.0
336,892 + -1.2
336,892 + -1.6
336,893 - -0.3
336,905 + -2.3
336,910 + +0.4
336,965 + -0.4
336,965 + -0.5
336,965 + +0.1
337,124 - CA265_RS01340 0.16 +0.1
337,175 + CA265_RS01340 0.19 +0.7
337,284 + CA265_RS01340 0.25 +0.7
337,298 + CA265_RS01340 0.26 +0.5
337,324 + CA265_RS01340 0.28 +0.4
337,402 + CA265_RS01340 0.32 -0.9
337,402 + CA265_RS01340 0.32 +0.6
337,617 - CA265_RS01340 0.44 -0.3
337,620 + CA265_RS01340 0.44 +0.3
337,663 + CA265_RS01340 0.47 +0.2
337,664 - CA265_RS01340 0.47 -1.2
337,688 + CA265_RS01340 0.48 +0.0
337,765 - CA265_RS01340 0.52 -0.2
337,809 + CA265_RS01340 0.55 -0.3
337,854 + CA265_RS01340 0.57 +0.7
337,863 + CA265_RS01340 0.58 +0.8
337,863 + CA265_RS01340 0.58 +0.4
337,864 - CA265_RS01340 0.58 -0.0
337,963 + CA265_RS01340 0.63 +2.0
337,972 - CA265_RS01340 0.64 +0.2
338,100 + CA265_RS01340 0.71 -0.2
338,130 + CA265_RS01340 0.73 +0.4
338,196 + CA265_RS01340 0.76 +0.2
338,196 + CA265_RS01340 0.76 +0.7
338,197 - CA265_RS01340 0.77 +0.1
338,220 - CA265_RS01340 0.78 +0.2
338,221 + CA265_RS01340 0.78 +0.5
338,225 - CA265_RS01340 0.78 +0.3
338,253 + CA265_RS01340 0.80 +0.6
338,295 + CA265_RS01340 0.82 -0.5
338,295 + CA265_RS01340 0.82 +0.3
338,296 - CA265_RS01340 0.82 +0.4
338,296 - CA265_RS01340 0.82 -1.8
338,296 - CA265_RS01340 0.82 +1.2
338,296 - -0.6
338,298 - CA265_RS01340 0.82 -0.2
338,394 - CA265_RS01340 0.88 +0.6
338,394 - CA265_RS01340 0.88 +0.2
338,501 + -0.1
338,506 + -0.3
338,561 + -0.2
338,561 + +0.9
338,562 - +1.1
338,656 + -0.6
338,677 + -0.1
338,677 + +0.0
338,726 - -0.1
338,740 + -1.2
338,749 + +0.1
338,761 - +0.8
338,864 + CA265_RS01345 0.16 +0.2
338,876 + CA265_RS01345 0.17 +0.2
338,904 + CA265_RS01345 0.19 -0.3
338,904 + CA265_RS01345 0.19 +0.6
338,905 - CA265_RS01345 0.20 -0.7
338,936 - CA265_RS01345 0.22 -0.2
339,082 + CA265_RS01345 0.34 +0.6
339,098 - CA265_RS01345 0.36 +0.9
339,160 - CA265_RS01345 0.41 +0.2
339,182 - CA265_RS01345 0.43 -1.1
339,226 + CA265_RS01345 0.47 +0.5
339,238 + CA265_RS01345 0.48 +0.2
339,239 - CA265_RS01345 0.48 -0.3
339,246 + CA265_RS01345 0.48 +0.1
339,271 + CA265_RS01345 0.50 +0.1
339,272 - CA265_RS01345 0.50 -0.6
339,276 - CA265_RS01345 0.51 +0.1
339,276 - CA265_RS01345 0.51 +0.4
339,277 + CA265_RS01345 0.51 +1.8
339,277 + CA265_RS01345 0.51 -0.6
339,349 + CA265_RS01345 0.57 -2.0
339,488 - CA265_RS01345 0.69 +0.4
339,490 + CA265_RS01345 0.69 -0.3
339,491 - CA265_RS01345 0.69 -0.1
339,580 - CA265_RS01345 0.76 -0.5

Or see this region's nucleotide sequence