Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4472

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4471 and Ac3H11_4472 are separated by 76 nucleotidesAc3H11_4472 and Ac3H11_4473 are separated by 57 nucleotides Ac3H11_4471 - Twitching motility protein PilT, at 54,100 to 55,236 _4471 Ac3H11_4472 - transcriptional regulator, Crp/Fnr family, at 55,313 to 55,948 _4472 Ac3H11_4473 - Twitching motility protein PilT, at 56,006 to 57,049 _4473 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.742 kb on + strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 54.743 kb on - strand, within Ac3H11_4471at 55.071 kb on + strand, within Ac3H11_4471at 55.071 kb on + strand, within Ac3H11_4471at 55.071 kb on + strand, within Ac3H11_4471at 55.071 kb on + strand, within Ac3H11_4471at 55.072 kb on - strand, within Ac3H11_4471at 55.072 kb on - strand, within Ac3H11_4471at 55.072 kb on - strand, within Ac3H11_4471at 55.072 kb on - strand, within Ac3H11_4471at 55.215 kb on + strandat 55.215 kb on + strandat 55.215 kb on + strandat 55.216 kb on - strandat 55.216 kb on - strandat 55.216 kb on - strandat 55.630 kb on - strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.728 kb on + strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.729 kb on - strand, within Ac3H11_4472at 55.948 kb on + strandat 55.948 kb on + strandat 55.948 kb on + strandat 55.948 kb on + strandat 55.948 kb on + strandat 55.948 kb on + strandat 55.948 kb on + strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.949 kb on - strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.988 kb on + strandat 55.989 kb on - strandat 55.989 kb on - strandat 55.989 kb on - strandat 55.989 kb on - strandat 55.989 kb on - strandat 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.142 kb on + strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.143 kb on - strand, within Ac3H11_4473at 56.596 kb on - strand, within Ac3H11_4473at 56.613 kb on + strand, within Ac3H11_4473at 56.613 kb on + strand, within Ac3H11_4473at 56.614 kb on - strand, within Ac3H11_4473at 56.614 kb on - strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.862 kb on + strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.863 kb on - strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strandat 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.895 kb on + strand, within Ac3H11_4473at 56.896 kb on - strand, within Ac3H11_4473at 56.896 kb on - strand, within Ac3H11_4473

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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54,742 + Ac3H11_4471 0.56 +0.0
54,743 - Ac3H11_4471 0.57 +1.0
54,743 - Ac3H11_4471 0.57 -0.3
54,743 - Ac3H11_4471 0.57 -1.0
54,743 - Ac3H11_4471 0.57 -0.0
55,071 + Ac3H11_4471 0.85 +0.3
55,071 + Ac3H11_4471 0.85 +0.1
55,071 + Ac3H11_4471 0.85 +0.9
55,071 + Ac3H11_4471 0.85 +0.3
55,072 - Ac3H11_4471 0.85 +0.2
55,072 - Ac3H11_4471 0.85 -0.3
55,072 - Ac3H11_4471 0.85 +0.3
55,072 - Ac3H11_4471 0.85 -0.9
55,215 + +0.4
55,215 + -0.6
55,215 + +0.2
55,216 - +0.5
55,216 - +0.1
55,216 - -0.5
55,630 - Ac3H11_4472 0.50 -0.8
55,728 + Ac3H11_4472 0.65 -1.2
55,728 + Ac3H11_4472 0.65 -1.7
55,728 + Ac3H11_4472 0.65 -1.2
55,728 + Ac3H11_4472 0.65 -1.9
55,728 + Ac3H11_4472 0.65 +0.4
55,728 + Ac3H11_4472 0.65 -0.3
55,728 + Ac3H11_4472 0.65 -0.6
55,728 + Ac3H11_4472 0.65 +0.5
55,729 - Ac3H11_4472 0.65 -0.0
55,729 - Ac3H11_4472 0.65 -0.5
55,729 - Ac3H11_4472 0.65 +1.2
55,729 - Ac3H11_4472 0.65 -1.2
55,729 - Ac3H11_4472 0.65 -0.0
55,729 - Ac3H11_4472 0.65 +0.3
55,948 + +0.3
55,948 + +1.0
55,948 + +0.4
55,948 + -1.6
55,948 + -0.6
55,948 + +0.5
55,948 + -0.2
55,949 - +0.2
55,949 - -0.6
55,949 - +1.2
55,949 - -2.3
55,949 - +0.2
55,949 - +0.1
55,988 + -0.3
55,988 + +0.6
55,988 + -1.3
55,988 + +0.8
55,988 + -0.7
55,988 + -0.0
55,988 + -0.1
55,988 + -0.0
55,989 - +0.0
55,989 - -0.3
55,989 - -0.0
55,989 - -1.6
55,989 - +1.2
56,142 + Ac3H11_4473 0.13 -0.8
56,142 + Ac3H11_4473 0.13 +0.4
56,142 + Ac3H11_4473 0.13 -0.4
56,142 + Ac3H11_4473 0.13 -1.7
56,142 + Ac3H11_4473 0.13 +0.1
56,142 + Ac3H11_4473 0.13 -2.2
56,142 + Ac3H11_4473 0.13 +0.3
56,142 + Ac3H11_4473 0.13 -0.2
56,142 + Ac3H11_4473 0.13 +0.1
56,143 - Ac3H11_4473 0.13 -0.1
56,143 - Ac3H11_4473 0.13 -0.6
56,143 - Ac3H11_4473 0.13 -1.1
56,143 - Ac3H11_4473 0.13 +1.0
56,143 - Ac3H11_4473 0.13 +0.2
56,143 - Ac3H11_4473 0.13 -0.0
56,143 - Ac3H11_4473 0.13 +0.2
56,143 - Ac3H11_4473 0.13 -0.5
56,143 - Ac3H11_4473 0.13 +0.7
56,143 - Ac3H11_4473 0.13 -0.6
56,143 - Ac3H11_4473 0.13 -0.4
56,143 - Ac3H11_4473 0.13 +0.9
56,143 - Ac3H11_4473 0.13 +0.0
56,143 - Ac3H11_4473 0.13 -0.1
56,143 - Ac3H11_4473 0.13 +0.3
56,143 - Ac3H11_4473 0.13 -0.4
56,596 - Ac3H11_4473 0.57 +1.9
56,613 + Ac3H11_4473 0.58 -0.3
56,613 + Ac3H11_4473 0.58 -0.4
56,614 - Ac3H11_4473 0.58 -0.9
56,614 - Ac3H11_4473 0.58 -0.6
56,862 + Ac3H11_4473 0.82 +0.3
56,862 + Ac3H11_4473 0.82 +0.1
56,862 + Ac3H11_4473 0.82 -0.0
56,863 - Ac3H11_4473 0.82 +0.1
56,863 - Ac3H11_4473 0.82 +0.4
56,863 - Ac3H11_4473 0.82 +0.1
56,863 - Ac3H11_4473 0.82 -0.6
56,895 + Ac3H11_4473 0.85 -0.4
56,895 + Ac3H11_4473 0.85 +0.0
56,895 + -0.4
56,895 + Ac3H11_4473 0.85 +0.5
56,895 + Ac3H11_4473 0.85 -0.0
56,895 + Ac3H11_4473 0.85 -1.5
56,895 + Ac3H11_4473 0.85 +0.1
56,896 - Ac3H11_4473 0.85 -1.4
56,896 - Ac3H11_4473 0.85 -0.2

Or see this region's nucleotide sequence