Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3277 and Ac3H11_3278 are separated by 83 nucleotides Ac3H11_3278 and Ac3H11_3279 are separated by 111 nucleotides Ac3H11_3279 and Ac3H11_3280 are separated by 123 nucleotides Ac3H11_3280 and Ac3H11_3281 are separated by 51 nucleotides
Ac3H11_3277 - LysR family transcriptional regulator PA2758, at 9,146 to 10,087
_3277
Ac3H11_3278 - hypothetical protein, at 10,171 to 10,974
_3278
Ac3H11_3279 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 11,086 to 12,066
_3279
Ac3H11_3280 - Gfa-like protein, at 12,190 to 12,594
_3280
Ac3H11_3281 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 12,646 to 13,491
_3281
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1 at 10.103 kb on - strand at 10.149 kb on + strand at 10.484 kb on + strand, within Ac3H11_3278 at 10.484 kb on + strand, within Ac3H11_3278 at 10.484 kb on + strand, within Ac3H11_3278 at 10.484 kb on + strand, within Ac3H11_3278 at 10.485 kb on - strand, within Ac3H11_3278 at 10.517 kb on + strand, within Ac3H11_3278 at 10.518 kb on - strand, within Ac3H11_3278 at 10.659 kb on - strand, within Ac3H11_3278 at 10.659 kb on - strand, within Ac3H11_3278 at 10.659 kb on - strand, within Ac3H11_3278 at 11.083 kb on - strand at 11.132 kb on - strand at 12.046 kb on + strand at 12.271 kb on + strand, within Ac3H11_3280 at 12.271 kb on + strand, within Ac3H11_3280 at 12.272 kb on - strand, within Ac3H11_3280 at 12.272 kb on - strand, within Ac3H11_3280 at 12.272 kb on - strand, within Ac3H11_3280 at 12.373 kb on + strand, within Ac3H11_3280 at 12.373 kb on + strand, within Ac3H11_3280 at 12.373 kb on + strand, within Ac3H11_3280 at 12.374 kb on - strand, within Ac3H11_3280 at 12.374 kb on - strand, within Ac3H11_3280 at 12.374 kb on - strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.403 kb on + strand, within Ac3H11_3280 at 12.404 kb on - strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.469 kb on + strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.470 kb on - strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.482 kb on + strand, within Ac3H11_3280 at 12.483 kb on - strand, within Ac3H11_3280 at 12.483 kb on - strand, within Ac3H11_3280 at 12.483 kb on - strand, within Ac3H11_3280 at 12.586 kb on + strand at 12.586 kb on + strand at 12.587 kb on - strand at 12.587 kb on - strand at 12.609 kb on + strand at 12.838 kb on + strand, within Ac3H11_3281 at 12.838 kb on + strand, within Ac3H11_3281 at 12.838 kb on + strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.853 kb on + strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.886 kb on - strand at 12.886 kb on - strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.061 kb on - strand, within Ac3H11_3281 at 13.061 kb on - strand, within Ac3H11_3281
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 10,103 - -0.7 10,149 + -1.1 10,484 + Ac3H11_3278 0.39 +0.6 10,484 + Ac3H11_3278 0.39 +0.4 10,484 + Ac3H11_3278 0.39 +1.4 10,484 + Ac3H11_3278 0.39 +1.1 10,485 - Ac3H11_3278 0.39 +0.7 10,517 + Ac3H11_3278 0.43 -0.0 10,518 - Ac3H11_3278 0.43 +1.0 10,659 - Ac3H11_3278 0.61 -0.3 10,659 - Ac3H11_3278 0.61 +0.0 10,659 - Ac3H11_3278 0.61 -0.2 11,083 - -1.7 11,132 - -0.5 12,046 + +0.4 12,271 + Ac3H11_3280 0.20 +0.2 12,271 + Ac3H11_3280 0.20 -0.4 12,272 - Ac3H11_3280 0.20 -0.2 12,272 - Ac3H11_3280 0.20 -0.7 12,272 - Ac3H11_3280 0.20 -0.9 12,373 + Ac3H11_3280 0.45 -0.1 12,373 + Ac3H11_3280 0.45 -0.4 12,373 + Ac3H11_3280 0.45 -0.5 12,374 - Ac3H11_3280 0.45 -1.0 12,374 - Ac3H11_3280 0.45 +0.3 12,374 - Ac3H11_3280 0.45 +0.2 12,403 + Ac3H11_3280 0.53 -1.3 12,403 + Ac3H11_3280 0.53 +0.5 12,403 + Ac3H11_3280 0.53 +0.5 12,403 + Ac3H11_3280 0.53 -0.3 12,403 + Ac3H11_3280 0.53 -0.6 12,403 + Ac3H11_3280 0.53 -0.9 12,404 - Ac3H11_3280 0.53 +0.1 12,469 + Ac3H11_3280 0.69 -1.0 12,469 + Ac3H11_3280 0.69 +0.2 12,469 + Ac3H11_3280 0.69 -1.0 12,469 + Ac3H11_3280 0.69 -0.3 12,469 + Ac3H11_3280 0.69 -1.0 12,469 + Ac3H11_3280 0.69 -0.1 12,469 + Ac3H11_3280 0.69 +1.1 12,469 + Ac3H11_3280 0.69 -0.3 12,469 + Ac3H11_3280 0.69 +0.1 12,469 + Ac3H11_3280 0.69 +0.4 12,469 + Ac3H11_3280 0.69 +0.1 12,470 - Ac3H11_3280 0.69 -0.8 12,470 - Ac3H11_3280 0.69 -0.1 12,470 - Ac3H11_3280 0.69 -0.0 12,470 - Ac3H11_3280 0.69 -0.0 12,470 - Ac3H11_3280 0.69 -1.5 12,470 - Ac3H11_3280 0.69 +0.2 12,470 - Ac3H11_3280 0.69 +0.4 12,470 - Ac3H11_3280 0.69 -1.0 12,470 - Ac3H11_3280 0.69 +0.7 12,470 - Ac3H11_3280 0.69 +0.3 12,470 - Ac3H11_3280 0.69 +0.5 12,470 - Ac3H11_3280 0.69 -0.2 12,470 - Ac3H11_3280 0.69 +0.1 12,470 - Ac3H11_3280 0.69 -0.9 12,470 - Ac3H11_3280 0.69 +0.6 12,482 + Ac3H11_3280 0.72 -0.3 12,482 + Ac3H11_3280 0.72 +0.2 12,482 + Ac3H11_3280 0.72 +0.4 12,482 + Ac3H11_3280 0.72 +0.8 12,482 + Ac3H11_3280 0.72 -0.6 12,482 + Ac3H11_3280 0.72 +0.4 12,482 + Ac3H11_3280 0.72 +0.5 12,482 + Ac3H11_3280 0.72 +0.1 12,482 + Ac3H11_3280 0.72 +0.1 12,483 - Ac3H11_3280 0.72 -0.0 12,483 - Ac3H11_3280 0.72 +0.3 12,483 - Ac3H11_3280 0.72 -0.1 12,586 + +1.5 12,586 + +0.2 12,587 - +0.9 12,587 - +0.2 12,609 + -0.3 12,838 + Ac3H11_3281 0.23 +0.6 12,838 + Ac3H11_3281 0.23 +0.6 12,838 + Ac3H11_3281 0.23 +0.3 12,839 - Ac3H11_3281 0.23 +0.1 12,839 - Ac3H11_3281 0.23 +1.1 12,839 - Ac3H11_3281 0.23 -0.2 12,839 - Ac3H11_3281 0.23 +0.1 12,839 - Ac3H11_3281 0.23 -0.2 12,853 + Ac3H11_3281 0.24 -0.1 12,854 - Ac3H11_3281 0.25 +1.1 12,854 - Ac3H11_3281 0.25 -0.4 12,854 - Ac3H11_3281 0.25 +0.3 12,854 - Ac3H11_3281 0.25 -0.2 12,854 - Ac3H11_3281 0.25 -0.1 12,885 + Ac3H11_3281 0.28 +1.1 12,885 + Ac3H11_3281 0.28 +0.2 12,885 + Ac3H11_3281 0.28 +0.7 12,886 - -0.7 12,886 - Ac3H11_3281 0.28 +0.2 12,994 + Ac3H11_3281 0.41 -0.4 12,994 + Ac3H11_3281 0.41 -1.3 12,994 + Ac3H11_3281 0.41 -0.4 12,994 + Ac3H11_3281 0.41 +0.6 12,994 + Ac3H11_3281 0.41 -1.3 12,995 - Ac3H11_3281 0.41 -0.1 12,995 - Ac3H11_3281 0.41 +0.2 12,995 - Ac3H11_3281 0.41 -0.7 12,995 - Ac3H11_3281 0.41 +0.1 13,060 + Ac3H11_3281 0.49 +0.1 13,060 + Ac3H11_3281 0.49 -0.1 13,060 + Ac3H11_3281 0.49 +0.0 13,060 + Ac3H11_3281 0.49 -0.0 13,060 + Ac3H11_3281 0.49 -0.8 13,060 + Ac3H11_3281 0.49 +1.0 13,060 + Ac3H11_3281 0.49 +0.4 13,060 + Ac3H11_3281 0.49 -0.1 13,060 + Ac3H11_3281 0.49 -0.2 13,060 + Ac3H11_3281 0.49 -0.5 13,061 - Ac3H11_3281 0.49 +0.4 13,061 - Ac3H11_3281 0.49 +0.5
Or see this region's nucleotide sequence