Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2064

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2063 and Ac3H11_2064 are separated by 122 nucleotidesAc3H11_2064 and Ac3H11_2065 overlap by 11 nucleotidesAc3H11_2065 and Ac3H11_2066 are separated by 14 nucleotides Ac3H11_2063 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 287,678 to 288,862 _2063 Ac3H11_2064 - glucose ABC transporter, permease component 1 (from data), at 288,985 to 289,866 _2064 Ac3H11_2065 - glucose ABC transporter, permease component 2 (from data), at 289,856 to 290,725 _2065 Ac3H11_2066 - glucose ABC transporter, ATPase component (from data), at 290,740 to 291,807 _2066 Position (kb) 288 289 290Strain fitness (log2 ratio) -1 0 1 2at 288.080 kb on + strand, within Ac3H11_2063at 288.080 kb on + strand, within Ac3H11_2063at 288.081 kb on - strand, within Ac3H11_2063at 288.383 kb on + strand, within Ac3H11_2063at 288.383 kb on + strand, within Ac3H11_2063at 288.384 kb on - strand, within Ac3H11_2063at 288.384 kb on - strand, within Ac3H11_2063at 288.596 kb on + strand, within Ac3H11_2063at 288.597 kb on - strand, within Ac3H11_2063at 288.597 kb on - strand, within Ac3H11_2063at 288.746 kb on + strandat 288.747 kb on - strandat 288.747 kb on - strandat 288.884 kb on + strandat 288.953 kb on - strandat 289.029 kb on - strandat 289.029 kb on - strandat 289.064 kb on - strandat 289.064 kb on - strandat 289.064 kb on - strandat 289.123 kb on + strand, within Ac3H11_2064at 289.124 kb on - strand, within Ac3H11_2064at 289.148 kb on - strand, within Ac3H11_2064at 289.216 kb on + strand, within Ac3H11_2064at 289.303 kb on + strand, within Ac3H11_2064at 289.303 kb on + strand, within Ac3H11_2064at 289.303 kb on + strand, within Ac3H11_2064at 289.303 kb on + strand, within Ac3H11_2064at 289.304 kb on - strand, within Ac3H11_2064at 289.304 kb on - strand, within Ac3H11_2064at 289.304 kb on - strand, within Ac3H11_2064at 289.304 kb on - strand, within Ac3H11_2064at 289.310 kb on - strand, within Ac3H11_2064at 289.453 kb on + strand, within Ac3H11_2064at 289.454 kb on - strand, within Ac3H11_2064at 289.454 kb on - strand, within Ac3H11_2064at 289.735 kb on + strand, within Ac3H11_2064at 289.735 kb on + strand, within Ac3H11_2064at 289.735 kb on + strand, within Ac3H11_2064at 289.735 kb on + strand, within Ac3H11_2064at 289.736 kb on - strand, within Ac3H11_2064at 289.736 kb on - strand, within Ac3H11_2064at 289.736 kb on - strand, within Ac3H11_2064at 289.825 kb on + strandat 289.826 kb on - strandat 289.831 kb on + strandat 289.831 kb on + strandat 289.864 kb on + strandat 289.977 kb on - strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.169 kb on - strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.372 kb on + strand, within Ac3H11_2065at 290.667 kb on - strandat 290.667 kb on - strandat 290.667 kb on - strandat 290.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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288,080 + Ac3H11_2063 0.34 +1.0
288,080 + Ac3H11_2063 0.34 +0.1
288,081 - Ac3H11_2063 0.34 +1.0
288,383 + Ac3H11_2063 0.59 -0.2
288,383 + Ac3H11_2063 0.59 -0.3
288,384 - Ac3H11_2063 0.60 +0.2
288,384 - Ac3H11_2063 0.60 -0.3
288,596 + Ac3H11_2063 0.77 -0.6
288,597 - Ac3H11_2063 0.78 +0.4
288,597 - Ac3H11_2063 0.78 +0.1
288,746 + +0.0
288,747 - -0.5
288,747 - +0.2
288,884 + -0.8
288,953 - -0.4
289,029 - -0.3
289,029 - +0.2
289,064 - -0.7
289,064 - +0.3
289,064 - +0.6
289,123 + Ac3H11_2064 0.16 -0.0
289,124 - Ac3H11_2064 0.16 +1.3
289,148 - Ac3H11_2064 0.18 -1.4
289,216 + Ac3H11_2064 0.26 -0.4
289,303 + Ac3H11_2064 0.36 -0.7
289,303 + Ac3H11_2064 0.36 +0.2
289,303 + Ac3H11_2064 0.36 +0.3
289,303 + Ac3H11_2064 0.36 -0.6
289,304 - Ac3H11_2064 0.36 -0.3
289,304 - Ac3H11_2064 0.36 -0.2
289,304 - Ac3H11_2064 0.36 +0.3
289,304 - Ac3H11_2064 0.36 +0.0
289,310 - Ac3H11_2064 0.37 +0.2
289,453 + Ac3H11_2064 0.53 +2.4
289,454 - Ac3H11_2064 0.53 -0.6
289,454 - Ac3H11_2064 0.53 -0.6
289,735 + Ac3H11_2064 0.85 +0.4
289,735 + Ac3H11_2064 0.85 +0.4
289,735 + Ac3H11_2064 0.85 -0.4
289,735 + Ac3H11_2064 0.85 +0.5
289,736 - Ac3H11_2064 0.85 -0.6
289,736 - Ac3H11_2064 0.85 +0.0
289,736 - Ac3H11_2064 0.85 +0.8
289,825 + +1.5
289,826 - +0.2
289,831 + +0.7
289,831 + -0.7
289,864 + +1.0
289,977 - Ac3H11_2065 0.14 -0.4
290,168 + Ac3H11_2065 0.36 -0.3
290,168 + Ac3H11_2065 0.36 -0.6
290,168 + Ac3H11_2065 0.36 -1.1
290,168 + Ac3H11_2065 0.36 +0.2
290,169 - Ac3H11_2065 0.36 -0.0
290,369 + Ac3H11_2065 0.59 +0.3
290,369 + Ac3H11_2065 0.59 -0.4
290,369 + Ac3H11_2065 0.59 -0.3
290,369 + Ac3H11_2065 0.59 +0.9
290,370 - Ac3H11_2065 0.59 -1.7
290,370 - Ac3H11_2065 0.59 +0.4
290,370 - Ac3H11_2065 0.59 +0.6
290,370 - Ac3H11_2065 0.59 -0.7
290,370 - Ac3H11_2065 0.59 -0.4
290,372 + Ac3H11_2065 0.59 -0.2
290,667 - -0.0
290,667 - +1.1
290,667 - -0.1
290,732 - -0.1

Or see this region's nucleotide sequence