Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04235

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04230 and AZOBR_RS04235 are separated by 402 nucleotidesAZOBR_RS04235 and AZOBR_RS04240 are separated by 75 nucleotides AZOBR_RS04230: AZOBR_RS04230 - indole-3-pyruvate decarboxylase, at 890,018 to 891,655 _RS04230 AZOBR_RS04235: AZOBR_RS04235 - glutamyl-tRNA synthetase, at 892,058 to 893,416 _RS04235 AZOBR_RS04240: AZOBR_RS04240 - cysteinyl-tRNA synthetase, at 893,492 to 894,865 _RS04240 Position (kb) 892 893 894Strain fitness (log2 ratio) -1 0 1at 891.396 kb on + strand, within AZOBR_RS04230at 891.441 kb on + strand, within AZOBR_RS04230at 891.441 kb on + strand, within AZOBR_RS04230at 891.442 kb on - strand, within AZOBR_RS04230at 891.442 kb on - strand, within AZOBR_RS04230at 891.442 kb on - strand, within AZOBR_RS04230at 892.017 kb on + strandat 892.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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891,396 + AZOBR_RS04230 0.84 +0.0
891,441 + AZOBR_RS04230 0.87 -0.6
891,441 + AZOBR_RS04230 0.87 +0.1
891,442 - AZOBR_RS04230 0.87 -0.3
891,442 - AZOBR_RS04230 0.87 +0.1
891,442 - AZOBR_RS04230 0.87 +0.2
892,017 + +0.1
892,017 + -0.1

Or see this region's nucleotide sequence