Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26610

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26605 and AO353_26610 are separated by 83 nucleotidesAO353_26610 and AO353_26615 are separated by 9 nucleotides AO353_26605: AO353_26605 - MFS transporter, at 5,825,519 to 5,827,186 _26605 AO353_26610: AO353_26610 - hypothetical protein, at 5,827,270 to 5,828,070 _26610 AO353_26615: AO353_26615 - pyridine nucleotide-disulfide oxidoreductase, at 5,828,080 to 5,829,324 _26615 Position (kb) 5827 5828 5829Strain fitness (log2 ratio) -2 -1 0 1 2at 5826.283 kb on + strand, within AO353_26605at 5826.367 kb on + strand, within AO353_26605at 5826.368 kb on - strand, within AO353_26605at 5826.619 kb on - strand, within AO353_26605at 5826.619 kb on - strand, within AO353_26605at 5826.619 kb on - strand, within AO353_26605at 5826.619 kb on - strand, within AO353_26605at 5826.694 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strandat 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.753 kb on + strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.754 kb on - strand, within AO353_26605at 5826.756 kb on + strand, within AO353_26605at 5826.756 kb on + strand, within AO353_26605at 5826.756 kb on + strand, within AO353_26605at 5826.756 kb on + strand, within AO353_26605at 5826.756 kb on + strand, within AO353_26605at 5826.757 kb on - strand, within AO353_26605at 5826.757 kb on - strand, within AO353_26605at 5826.757 kb on - strand, within AO353_26605at 5826.790 kb on + strand, within AO353_26605at 5826.791 kb on - strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strandat 5826.864 kb on + strand, within AO353_26605at 5826.864 kb on + strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.865 kb on - strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.878 kb on + strand, within AO353_26605at 5826.879 kb on - strand, within AO353_26605at 5826.957 kb on + strand, within AO353_26605at 5826.957 kb on + strand, within AO353_26605at 5826.957 kb on + strand, within AO353_26605at 5826.958 kb on - strand, within AO353_26605at 5826.958 kb on - strand, within AO353_26605at 5826.958 kb on - strand, within AO353_26605at 5826.958 kb on - strand, within AO353_26605at 5826.958 kb on - strand, within AO353_26605at 5827.014 kb on + strand, within AO353_26605at 5827.014 kb on + strand, within AO353_26605at 5827.086 kb on + strandat 5827.087 kb on - strandat 5827.087 kb on - strandat 5827.112 kb on + strandat 5827.112 kb on + strandat 5827.113 kb on - strandat 5827.113 kb on - strandat 5827.218 kb on + strandat 5827.219 kb on - strandat 5827.289 kb on + strandat 5827.289 kb on + strandat 5827.289 kb on + strandat 5827.398 kb on + strand, within AO353_26610at 5827.398 kb on + strand, within AO353_26610at 5827.513 kb on + strand, within AO353_26610at 5827.513 kb on + strand, within AO353_26610at 5827.513 kb on + strand, within AO353_26610at 5827.513 kb on + strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.514 kb on - strand, within AO353_26610at 5827.811 kb on + strand, within AO353_26610at 5827.811 kb on + strand, within AO353_26610at 5827.811 kb on + strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5827.812 kb on - strand, within AO353_26610at 5828.071 kb on - strandat 5828.071 kb on - strandat 5828.071 kb on - strandat 5828.249 kb on - strand, within AO353_26615at 5828.289 kb on - strand, within AO353_26615at 5828.297 kb on + strand, within AO353_26615at 5828.297 kb on + strand, within AO353_26615at 5828.298 kb on - strand, within AO353_26615at 5828.397 kb on + strand, within AO353_26615at 5828.398 kb on - strand, within AO353_26615at 5828.530 kb on + strand, within AO353_26615at 5828.663 kb on + strand, within AO353_26615at 5828.663 kb on + strand, within AO353_26615at 5828.664 kb on - strand, within AO353_26615at 5828.664 kb on - strand, within AO353_26615at 5828.675 kb on + strand, within AO353_26615at 5828.675 kb on + strand, within AO353_26615at 5828.675 kb on + strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.676 kb on - strand, within AO353_26615at 5828.755 kb on + strand, within AO353_26615at 5828.755 kb on + strand, within AO353_26615at 5828.756 kb on - strand, within AO353_26615at 5828.756 kb on - strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.792 kb on + strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.793 kb on - strand, within AO353_26615at 5828.891 kb on + strand, within AO353_26615at 5828.891 kb on + strand, within AO353_26615at 5828.892 kb on - strand, within AO353_26615at 5828.892 kb on - strand, within AO353_26615at 5828.912 kb on + strand, within AO353_26615at 5828.912 kb on + strand, within AO353_26615at 5828.912 kb on + strand, within AO353_26615at 5828.912 kb on + strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615at 5828.913 kb on - strand, within AO353_26615

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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5,826,283 + AO353_26605 0.46 -0.3
5,826,367 + AO353_26605 0.51 -0.1
5,826,368 - AO353_26605 0.51 +0.3
5,826,619 - AO353_26605 0.66 -0.6
5,826,619 - AO353_26605 0.66 +0.5
5,826,619 - AO353_26605 0.66 +0.2
5,826,619 - AO353_26605 0.66 +0.6
5,826,694 + AO353_26605 0.70 +1.2
5,826,753 + AO353_26605 0.74 -0.3
5,826,753 + AO353_26605 0.74 +1.5
5,826,753 + AO353_26605 0.74 +0.2
5,826,753 + AO353_26605 0.74 +0.1
5,826,753 + AO353_26605 0.74 -0.6
5,826,753 + AO353_26605 0.74 -1.1
5,826,753 + +1.0
5,826,753 + AO353_26605 0.74 +1.7
5,826,753 + AO353_26605 0.74 -0.6
5,826,753 + AO353_26605 0.74 -0.4
5,826,753 + AO353_26605 0.74 -0.7
5,826,753 + AO353_26605 0.74 +0.1
5,826,753 + AO353_26605 0.74 +0.4
5,826,753 + AO353_26605 0.74 -1.1
5,826,753 + AO353_26605 0.74 -0.3
5,826,753 + AO353_26605 0.74 -0.8
5,826,753 + AO353_26605 0.74 -0.8
5,826,753 + AO353_26605 0.74 +0.4
5,826,753 + AO353_26605 0.74 -1.1
5,826,753 + AO353_26605 0.74 +0.8
5,826,753 + AO353_26605 0.74 -0.2
5,826,753 + AO353_26605 0.74 +0.5
5,826,754 - AO353_26605 0.74 +0.2
5,826,754 - AO353_26605 0.74 +0.8
5,826,754 - AO353_26605 0.74 +0.4
5,826,754 - AO353_26605 0.74 +0.6
5,826,754 - AO353_26605 0.74 -0.6
5,826,754 - AO353_26605 0.74 +1.2
5,826,754 - AO353_26605 0.74 -1.5
5,826,754 - AO353_26605 0.74 -0.0
5,826,754 - AO353_26605 0.74 +2.5
5,826,754 - AO353_26605 0.74 +0.5
5,826,754 - AO353_26605 0.74 +0.4
5,826,754 - AO353_26605 0.74 -0.6
5,826,754 - AO353_26605 0.74 +0.3
5,826,754 - AO353_26605 0.74 +0.0
5,826,756 + AO353_26605 0.74 -1.3
5,826,756 + AO353_26605 0.74 -0.3
5,826,756 + AO353_26605 0.74 -0.3
5,826,756 + AO353_26605 0.74 +0.0
5,826,756 + AO353_26605 0.74 +0.3
5,826,757 - AO353_26605 0.74 +0.9
5,826,757 - AO353_26605 0.74 +0.6
5,826,757 - AO353_26605 0.74 +0.1
5,826,790 + AO353_26605 0.76 +1.8
5,826,791 - AO353_26605 0.76 +0.7
5,826,864 + AO353_26605 0.81 -0.3
5,826,864 + AO353_26605 0.81 -0.4
5,826,864 + AO353_26605 0.81 +0.1
5,826,864 + AO353_26605 0.81 +0.2
5,826,864 + AO353_26605 0.81 -0.4
5,826,864 + AO353_26605 0.81 -1.0
5,826,864 + AO353_26605 0.81 -0.0
5,826,864 + AO353_26605 0.81 -0.0
5,826,864 + AO353_26605 0.81 +0.2
5,826,864 + +1.5
5,826,864 + AO353_26605 0.81 +0.2
5,826,864 + AO353_26605 0.81 -1.0
5,826,865 - AO353_26605 0.81 +0.5
5,826,865 - AO353_26605 0.81 -0.6
5,826,865 - AO353_26605 0.81 +0.8
5,826,865 - AO353_26605 0.81 -0.4
5,826,865 - AO353_26605 0.81 +0.5
5,826,865 - AO353_26605 0.81 +0.2
5,826,865 - AO353_26605 0.81 +1.3
5,826,865 - AO353_26605 0.81 +0.1
5,826,865 - AO353_26605 0.81 +0.1
5,826,865 - AO353_26605 0.81 +0.3
5,826,878 + AO353_26605 0.81 +1.7
5,826,878 + AO353_26605 0.81 -1.8
5,826,878 + AO353_26605 0.81 +0.0
5,826,878 + AO353_26605 0.81 -1.6
5,826,878 + AO353_26605 0.81 -0.7
5,826,878 + AO353_26605 0.81 -0.8
5,826,879 - AO353_26605 0.82 +1.1
5,826,957 + AO353_26605 0.86 -0.3
5,826,957 + AO353_26605 0.86 -0.6
5,826,957 + AO353_26605 0.86 +0.3
5,826,958 - AO353_26605 0.86 -0.7
5,826,958 - AO353_26605 0.86 +0.2
5,826,958 - AO353_26605 0.86 +0.3
5,826,958 - AO353_26605 0.86 +0.6
5,826,958 - AO353_26605 0.86 +2.0
5,827,014 + AO353_26605 0.90 -1.3
5,827,014 + AO353_26605 0.90 -0.3
5,827,086 + -1.2
5,827,087 - +1.5
5,827,087 - -1.0
5,827,112 + -1.7
5,827,112 + -0.1
5,827,113 - -0.2
5,827,113 - -0.8
5,827,218 + -1.0
5,827,219 - +0.8
5,827,289 + -1.0
5,827,289 + -0.2
5,827,289 + +0.1
5,827,398 + AO353_26610 0.16 +0.7
5,827,398 + AO353_26610 0.16 +1.5
5,827,513 + AO353_26610 0.30 -0.3
5,827,513 + AO353_26610 0.30 +0.1
5,827,513 + AO353_26610 0.30 -0.2
5,827,513 + AO353_26610 0.30 +0.6
5,827,514 - AO353_26610 0.30 -0.1
5,827,514 - AO353_26610 0.30 -0.0
5,827,514 - AO353_26610 0.30 -1.8
5,827,514 - AO353_26610 0.30 +0.1
5,827,514 - AO353_26610 0.30 -0.1
5,827,514 - AO353_26610 0.30 +0.1
5,827,811 + AO353_26610 0.68 +1.2
5,827,811 + AO353_26610 0.68 +1.5
5,827,811 + AO353_26610 0.68 +0.0
5,827,812 - AO353_26610 0.68 +0.6
5,827,812 - AO353_26610 0.68 +0.5
5,827,812 - AO353_26610 0.68 +0.5
5,827,812 - AO353_26610 0.68 +1.6
5,827,812 - AO353_26610 0.68 +0.6
5,827,812 - AO353_26610 0.68 -0.8
5,827,812 - AO353_26610 0.68 +0.6
5,827,812 - AO353_26610 0.68 +1.8
5,827,812 - AO353_26610 0.68 +1.5
5,828,071 - -1.2
5,828,071 - +0.1
5,828,071 - +0.2
5,828,249 - AO353_26615 0.14 -0.2
5,828,289 - AO353_26615 0.17 +0.3
5,828,297 + AO353_26615 0.17 +0.9
5,828,297 + AO353_26615 0.17 +0.4
5,828,298 - AO353_26615 0.18 -0.1
5,828,397 + AO353_26615 0.25 +1.1
5,828,398 - AO353_26615 0.26 -0.1
5,828,530 + AO353_26615 0.36 +0.6
5,828,663 + AO353_26615 0.47 -0.0
5,828,663 + AO353_26615 0.47 +0.9
5,828,664 - AO353_26615 0.47 +0.4
5,828,664 - AO353_26615 0.47 -1.1
5,828,675 + AO353_26615 0.48 -1.3
5,828,675 + AO353_26615 0.48 +0.8
5,828,675 + AO353_26615 0.48 -0.7
5,828,676 - AO353_26615 0.48 -0.1
5,828,676 - AO353_26615 0.48 +0.6
5,828,676 - AO353_26615 0.48 +0.0
5,828,676 - AO353_26615 0.48 -0.3
5,828,676 - AO353_26615 0.48 +0.7
5,828,676 - AO353_26615 0.48 +0.8
5,828,755 + AO353_26615 0.54 +0.4
5,828,755 + AO353_26615 0.54 +0.9
5,828,756 - AO353_26615 0.54 -0.1
5,828,756 - AO353_26615 0.54 -0.3
5,828,792 + AO353_26615 0.57 +0.3
5,828,792 + AO353_26615 0.57 -0.2
5,828,792 + AO353_26615 0.57 +0.2
5,828,792 + AO353_26615 0.57 -0.3
5,828,792 + AO353_26615 0.57 -0.5
5,828,792 + AO353_26615 0.57 +1.5
5,828,793 - AO353_26615 0.57 +0.4
5,828,793 - AO353_26615 0.57 -0.2
5,828,793 - AO353_26615 0.57 -0.2
5,828,793 - AO353_26615 0.57 -1.9
5,828,793 - AO353_26615 0.57 +0.2
5,828,793 - AO353_26615 0.57 +0.9
5,828,793 - AO353_26615 0.57 +1.2
5,828,793 - AO353_26615 0.57 -0.9
5,828,793 - AO353_26615 0.57 -0.8
5,828,891 + AO353_26615 0.65 +0.5
5,828,891 + AO353_26615 0.65 -0.4
5,828,892 - AO353_26615 0.65 -0.3
5,828,892 - AO353_26615 0.65 -0.5
5,828,912 + AO353_26615 0.67 -0.7
5,828,912 + AO353_26615 0.67 -0.2
5,828,912 + AO353_26615 0.67 -0.7
5,828,912 + AO353_26615 0.67 -0.0
5,828,913 - AO353_26615 0.67 +0.9
5,828,913 - AO353_26615 0.67 -0.7
5,828,913 - AO353_26615 0.67 -0.8
5,828,913 - AO353_26615 0.67 +0.5
5,828,913 - AO353_26615 0.67 -0.2
5,828,913 - AO353_26615 0.67 +0.3
5,828,913 - AO353_26615 0.67 -0.8

Or see this region's nucleotide sequence