Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18525

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18515 and AO353_18520 are separated by 87 nucleotidesAO353_18520 and AO353_18525 are separated by 13 nucleotidesAO353_18525 and AO353_18530 are separated by 0 nucleotidesAO353_18530 and AO353_18535 are separated by 12 nucleotides AO353_18515: AO353_18515 - septation protein A, at 4,075,072 to 4,075,668 _18515 AO353_18520: AO353_18520 - phosphoesterase, at 4,075,756 to 4,076,619 _18520 AO353_18525: AO353_18525 - hypothetical protein, at 4,076,633 to 4,077,262 _18525 AO353_18530: AO353_18530 - chromosome segregation protein ScpA, at 4,077,263 to 4,078,081 _18530 AO353_18535: AO353_18535 - segregation and condensation protein B, at 4,078,094 to 4,079,122 _18535 Position (kb) 4076 4077 4078Strain fitness (log2 ratio) -3 -2 -1 0 1at 4075.700 kb on - strandat 4075.700 kb on - strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.703 kb on - strandat 4075.703 kb on - strandat 4075.703 kb on - strandat 4075.711 kb on + strandat 4075.711 kb on + strandat 4075.711 kb on + strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.746 kb on - strandat 4075.779 kb on + strandat 4075.780 kb on - strandat 4075.953 kb on + strand, within AO353_18520at 4075.953 kb on + strand, within AO353_18520at 4075.953 kb on + strand, within AO353_18520at 4075.954 kb on - strand, within AO353_18520at 4075.954 kb on - strand, within AO353_18520at 4076.125 kb on - strand, within AO353_18520at 4076.183 kb on - strand, within AO353_18520at 4076.183 kb on - strand, within AO353_18520at 4076.183 kb on - strand, within AO353_18520at 4076.183 kb on - strand, within AO353_18520at 4076.183 kb on - strand, within AO353_18520at 4076.347 kb on + strand, within AO353_18520at 4076.347 kb on + strand, within AO353_18520at 4076.347 kb on + strand, within AO353_18520at 4076.347 kb on + strand, within AO353_18520at 4076.389 kb on + strand, within AO353_18520at 4076.389 kb on + strand, within AO353_18520at 4076.389 kb on + strand, within AO353_18520at 4076.390 kb on - strand, within AO353_18520at 4076.390 kb on - strand, within AO353_18520at 4076.391 kb on + strand, within AO353_18520at 4076.391 kb on + strand, within AO353_18520at 4076.391 kb on + strand, within AO353_18520at 4076.391 kb on + strand, within AO353_18520at 4076.391 kb on + strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.392 kb on - strand, within AO353_18520at 4076.463 kb on + strand, within AO353_18520at 4076.464 kb on - strand, within AO353_18520at 4076.464 kb on - strand, within AO353_18520at 4076.546 kb on - strandat 4076.626 kb on - strandat 4076.626 kb on - strandat 4076.626 kb on - strandat 4076.626 kb on - strandat 4076.726 kb on + strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.727 kb on - strand, within AO353_18525at 4076.744 kb on + strand, within AO353_18525at 4076.745 kb on - strand, within AO353_18525at 4076.799 kb on + strand, within AO353_18525at 4076.921 kb on + strand, within AO353_18525at 4076.921 kb on + strand, within AO353_18525at 4076.921 kb on + strand, within AO353_18525at 4076.922 kb on - strandat 4076.929 kb on + strand, within AO353_18525at 4076.930 kb on - strand, within AO353_18525at 4076.930 kb on - strand, within AO353_18525at 4076.930 kb on - strand, within AO353_18525at 4077.166 kb on + strand, within AO353_18525at 4077.260 kb on + strandat 4077.260 kb on + strandat 4077.260 kb on + strandat 4077.260 kb on + strandat 4077.260 kb on + strandat 4077.261 kb on - strandat 4077.261 kb on - strandat 4077.261 kb on - strandat 4077.261 kb on - strandat 4077.273 kb on + strandat 4077.273 kb on + strandat 4077.274 kb on - strandat 4077.329 kb on + strandat 4077.330 kb on - strandat 4077.330 kb on - strandat 4077.365 kb on + strand, within AO353_18530at 4077.365 kb on + strand, within AO353_18530at 4077.366 kb on - strand, within AO353_18530at 4077.366 kb on - strand, within AO353_18530at 4077.431 kb on + strand, within AO353_18530at 4077.431 kb on + strand, within AO353_18530at 4077.432 kb on - strand, within AO353_18530at 4077.432 kb on - strand, within AO353_18530at 4077.494 kb on + strand, within AO353_18530at 4077.494 kb on + strand, within AO353_18530at 4077.494 kb on + strand, within AO353_18530at 4077.494 kb on + strand, within AO353_18530at 4077.494 kb on + strandat 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.495 kb on - strand, within AO353_18530at 4077.503 kb on + strand, within AO353_18530at 4077.503 kb on + strand, within AO353_18530at 4077.503 kb on + strand, within AO353_18530at 4077.503 kb on + strand, within AO353_18530at 4077.503 kb on + strand, within AO353_18530at 4077.504 kb on - strand, within AO353_18530at 4077.504 kb on - strand, within AO353_18530at 4077.504 kb on - strand, within AO353_18530at 4077.548 kb on + strand, within AO353_18530at 4077.668 kb on + strand, within AO353_18530at 4077.668 kb on + strand, within AO353_18530at 4077.668 kb on + strand, within AO353_18530at 4077.839 kb on - strand, within AO353_18530at 4077.839 kb on - strand, within AO353_18530at 4077.839 kb on - strand, within AO353_18530at 4077.839 kb on - strand, within AO353_18530at 4077.989 kb on - strand, within AO353_18530at 4078.181 kb on + strandat 4078.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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4,075,700 - +0.0
4,075,700 - +0.4
4,075,702 + -0.5
4,075,702 + +0.0
4,075,702 + +0.1
4,075,702 + -1.4
4,075,703 - -0.1
4,075,703 - +0.1
4,075,703 - +0.5
4,075,711 + -0.8
4,075,711 + +0.3
4,075,711 + -1.2
4,075,712 - +0.3
4,075,712 - +1.0
4,075,712 - -0.4
4,075,712 - +0.7
4,075,712 - -0.2
4,075,712 - -0.6
4,075,746 - +0.1
4,075,779 + -1.0
4,075,780 - +0.7
4,075,953 + AO353_18520 0.23 +1.2
4,075,953 + AO353_18520 0.23 -1.1
4,075,953 + AO353_18520 0.23 -0.6
4,075,954 - AO353_18520 0.23 +0.2
4,075,954 - AO353_18520 0.23 -0.8
4,076,125 - AO353_18520 0.43 -0.4
4,076,183 - AO353_18520 0.49 +0.4
4,076,183 - AO353_18520 0.49 +0.7
4,076,183 - AO353_18520 0.49 -0.5
4,076,183 - AO353_18520 0.49 -0.4
4,076,183 - AO353_18520 0.49 +0.2
4,076,347 + AO353_18520 0.68 +1.3
4,076,347 + AO353_18520 0.68 -0.5
4,076,347 + AO353_18520 0.68 -0.1
4,076,347 + AO353_18520 0.68 -0.8
4,076,389 + AO353_18520 0.73 +0.1
4,076,389 + AO353_18520 0.73 +1.1
4,076,389 + AO353_18520 0.73 -0.4
4,076,390 - AO353_18520 0.73 -0.7
4,076,390 - AO353_18520 0.73 +0.2
4,076,391 + AO353_18520 0.73 +0.8
4,076,391 + AO353_18520 0.73 -0.5
4,076,391 + AO353_18520 0.73 -0.2
4,076,391 + AO353_18520 0.73 +0.5
4,076,391 + AO353_18520 0.73 -1.0
4,076,392 - AO353_18520 0.74 +0.2
4,076,392 - AO353_18520 0.74 -0.9
4,076,392 - AO353_18520 0.74 +0.8
4,076,392 - AO353_18520 0.74 +0.1
4,076,392 - AO353_18520 0.74 -0.6
4,076,392 - AO353_18520 0.74 -0.5
4,076,463 + AO353_18520 0.82 +0.0
4,076,464 - AO353_18520 0.82 -0.4
4,076,464 - AO353_18520 0.82 -0.3
4,076,546 - -0.6
4,076,626 - -0.2
4,076,626 - -1.3
4,076,626 - -1.4
4,076,626 - +1.4
4,076,726 + AO353_18525 0.15 -0.3
4,076,727 - AO353_18525 0.15 +0.1
4,076,727 - AO353_18525 0.15 -1.9
4,076,727 - AO353_18525 0.15 +0.6
4,076,727 - AO353_18525 0.15 -1.4
4,076,727 - AO353_18525 0.15 -1.4
4,076,727 - AO353_18525 0.15 -0.5
4,076,744 + AO353_18525 0.18 -1.1
4,076,745 - AO353_18525 0.18 -0.5
4,076,799 + AO353_18525 0.26 -1.5
4,076,921 + AO353_18525 0.46 -1.0
4,076,921 + AO353_18525 0.46 -0.5
4,076,921 + AO353_18525 0.46 -0.3
4,076,922 - +1.3
4,076,929 + AO353_18525 0.47 -3.0
4,076,930 - AO353_18525 0.47 -1.2
4,076,930 - AO353_18525 0.47 +0.2
4,076,930 - AO353_18525 0.47 -0.3
4,077,166 + AO353_18525 0.85 -0.3
4,077,260 + -0.8
4,077,260 + +1.7
4,077,260 + -0.6
4,077,260 + -0.6
4,077,260 + +0.8
4,077,261 - -0.1
4,077,261 - -0.0
4,077,261 - -0.3
4,077,261 - -1.0
4,077,273 + -0.7
4,077,273 + -0.5
4,077,274 - +0.5
4,077,329 + -0.7
4,077,330 - +1.2
4,077,330 - -0.1
4,077,365 + AO353_18530 0.12 +0.2
4,077,365 + AO353_18530 0.12 +1.2
4,077,366 - AO353_18530 0.13 +1.2
4,077,366 - AO353_18530 0.13 +0.9
4,077,431 + AO353_18530 0.21 +0.0
4,077,431 + AO353_18530 0.21 -0.5
4,077,432 - AO353_18530 0.21 +0.5
4,077,432 - AO353_18530 0.21 -1.2
4,077,494 + AO353_18530 0.28 -0.5
4,077,494 + AO353_18530 0.28 +0.2
4,077,494 + AO353_18530 0.28 -1.0
4,077,494 + AO353_18530 0.28 -0.3
4,077,494 + +1.7
4,077,495 - AO353_18530 0.28 -1.3
4,077,495 - AO353_18530 0.28 -0.2
4,077,495 - AO353_18530 0.28 +0.3
4,077,495 - AO353_18530 0.28 -1.2
4,077,495 - AO353_18530 0.28 -0.5
4,077,495 - AO353_18530 0.28 -0.5
4,077,495 - AO353_18530 0.28 +0.4
4,077,495 - AO353_18530 0.28 +0.6
4,077,503 + AO353_18530 0.29 -0.1
4,077,503 + AO353_18530 0.29 +0.5
4,077,503 + AO353_18530 0.29 +0.4
4,077,503 + AO353_18530 0.29 -0.6
4,077,503 + AO353_18530 0.29 +0.1
4,077,504 - AO353_18530 0.29 +0.7
4,077,504 - AO353_18530 0.29 +0.4
4,077,504 - AO353_18530 0.29 -0.0
4,077,548 + AO353_18530 0.35 -0.5
4,077,668 + AO353_18530 0.49 +0.4
4,077,668 + AO353_18530 0.49 -1.6
4,077,668 + AO353_18530 0.49 +0.2
4,077,839 - AO353_18530 0.70 -0.1
4,077,839 - AO353_18530 0.70 -1.3
4,077,839 - AO353_18530 0.70 +1.6
4,077,839 - AO353_18530 0.70 -0.3
4,077,989 - AO353_18530 0.89 +0.1
4,078,181 + -0.5
4,078,181 + -0.9

Or see this region's nucleotide sequence