Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16560

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16555 and AO353_16560 are separated by 163 nucleotidesAO353_16560 and AO353_16565 are separated by 333 nucleotidesAO353_16565 and AO353_16570 overlap by 4 nucleotides AO353_16555: AO353_16555 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 3,678,555 to 3,679,400 _16555 AO353_16560: AO353_16560 - enolase, at 3,679,564 to 3,680,853 _16560 AO353_16565: AO353_16565 - cell division protein FtsB, at 3,681,187 to 3,681,465 _16565 AO353_16570: AO353_16570 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,681,462 to 3,682,169 _16570 Position (kb) 3679 3680 3681Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3679.421 kb on + strandat 3679.421 kb on + strandat 3679.466 kb on + strandat 3679.466 kb on + strandat 3679.467 kb on - strandat 3679.528 kb on + strandat 3679.529 kb on - strandat 3680.335 kb on + strand, within AO353_16560at 3680.776 kb on + strandat 3680.824 kb on + strandat 3680.824 kb on + strandat 3680.824 kb on + strandat 3680.824 kb on + strandat 3680.851 kb on + strandat 3680.861 kb on + strandat 3680.861 kb on + strandat 3680.865 kb on + strandat 3680.912 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.968 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3680.977 kb on + strandat 3681.002 kb on + strandat 3681.010 kb on + strandat 3681.010 kb on + strandat 3681.010 kb on + strandat 3681.010 kb on + strandat 3681.010 kb on + strandat 3681.047 kb on + strandat 3681.054 kb on + strandat 3681.054 kb on + strandat 3681.082 kb on + strandat 3681.095 kb on + strandat 3681.095 kb on + strandat 3681.095 kb on + strandat 3681.095 kb on + strandat 3681.095 kb on + strandat 3681.095 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.097 kb on + strandat 3681.101 kb on + strandat 3681.130 kb on + strandat 3681.142 kb on + strandat 3681.181 kb on + strandat 3681.470 kb on + strandat 3681.470 kb on + strandat 3681.470 kb on + strandat 3681.470 kb on + strandat 3681.470 kb on + strandat 3681.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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3,679,421 + +1.8
3,679,421 + -0.8
3,679,466 + -2.1
3,679,466 + +0.7
3,679,467 - +3.2
3,679,528 + -0.4
3,679,529 - -0.4
3,680,335 + AO353_16560 0.60 -2.2
3,680,776 + -2.9
3,680,824 + +1.3
3,680,824 + +1.0
3,680,824 + +1.2
3,680,824 + +2.0
3,680,851 + +0.8
3,680,861 + +0.0
3,680,861 + +0.7
3,680,865 + +0.5
3,680,912 + +0.6
3,680,968 + +0.9
3,680,968 + +1.3
3,680,968 + +0.7
3,680,968 + +0.0
3,680,968 + +0.9
3,680,968 + +0.8
3,680,968 + +0.1
3,680,968 + +0.9
3,680,968 + +1.3
3,680,977 + +0.6
3,680,977 + +1.5
3,680,977 + +0.8
3,680,977 + -1.8
3,680,977 + +0.6
3,680,977 + +0.1
3,680,977 + +0.5
3,680,977 + +1.3
3,681,002 + -1.7
3,681,010 + +1.8
3,681,010 + +0.9
3,681,010 + +0.6
3,681,010 + -0.7
3,681,010 + -0.7
3,681,047 + +1.6
3,681,054 + +0.1
3,681,054 + +1.1
3,681,082 + +0.8
3,681,095 + +0.1
3,681,095 + -1.7
3,681,095 + -0.3
3,681,095 + +1.1
3,681,095 + +0.2
3,681,095 + -0.2
3,681,097 + +0.1
3,681,097 + +2.3
3,681,097 + -1.1
3,681,097 + -0.2
3,681,097 + +2.2
3,681,097 + -0.4
3,681,097 + +0.3
3,681,097 + +0.3
3,681,097 + -0.4
3,681,097 + -0.1
3,681,097 + -1.0
3,681,097 + -0.2
3,681,097 + -0.3
3,681,097 + +0.7
3,681,101 + +0.4
3,681,130 + +0.5
3,681,142 + -0.2
3,681,181 + +2.8
3,681,470 + +0.1
3,681,470 + +1.1
3,681,470 + +0.3
3,681,470 + +0.4
3,681,470 + -0.1
3,681,470 + -0.3

Or see this region's nucleotide sequence