Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04410 and AO353_04415 are separated by 99 nucleotides AO353_04415 and AO353_04420 are separated by 228 nucleotides AO353_04420 and AO353_04425 overlap by 4 nucleotides
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
AO353_04415: AO353_04415 - preQ0 transporter, at 951,468 to 951,935
_04415
AO353_04420: AO353_04420 - Fe-S protein, at 952,164 to 952,379
_04420
AO353_04425: AO353_04425 - hypothetical protein, at 952,376 to 952,900
_04425
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.778 kb on - strand, within AO353_04410 at 950.861 kb on + strand, within AO353_04410 at 950.961 kb on - strand, within AO353_04410 at 950.975 kb on - strand, within AO353_04410 at 951.134 kb on + strand, within AO353_04410 at 951.135 kb on - strand, within AO353_04410 at 951.324 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.605 kb on + strand, within AO353_04415 at 951.633 kb on + strand, within AO353_04415 at 951.634 kb on - strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.666 kb on - strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.889 kb on + strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.948 kb on + strand at 951.949 kb on - strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.973 kb on - strand at 951.973 kb on - strand at 951.973 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.150 kb on + strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.169 kb on + strand at 952.263 kb on - strand, within AO353_04420 at 952.263 kb on - strand, within AO353_04420 at 952.313 kb on + strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.356 kb on + strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.421 kb on - strand at 952.421 kb on - strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.623 kb on + strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand at 952.840 kb on + strand, within AO353_04425 at 952.840 kb on + strand, within AO353_04425 at 952.841 kb on - strand, within AO353_04425 at 952.893 kb on + strand at 952.893 kb on + strand at 952.894 kb on - strand at 952.894 kb on - strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 950,778 - AO353_04410 0.50 +0.4 950,861 + AO353_04410 0.57 +0.4 950,961 - AO353_04410 0.65 -0.8 950,975 - AO353_04410 0.67 -0.1 951,134 + AO353_04410 0.80 -1.1 951,135 - AO353_04410 0.80 +0.3 951,324 + -0.5 951,446 + +0.7 951,446 + +0.2 951,446 + -0.1 951,447 - -1.3 951,447 - -1.7 951,447 - +0.1 951,605 + AO353_04415 0.29 +1.3 951,633 + AO353_04415 0.35 +0.3 951,634 - AO353_04415 0.35 -0.2 951,665 + AO353_04415 0.42 +0.1 951,665 + AO353_04415 0.42 +0.7 951,665 + AO353_04415 0.42 +0.0 951,666 - AO353_04415 0.42 +1.8 951,751 + AO353_04415 0.60 +1.8 951,751 + AO353_04415 0.60 -0.2 951,752 - AO353_04415 0.61 +0.8 951,752 - AO353_04415 0.61 +0.4 951,831 + AO353_04415 0.78 +0.0 951,831 + AO353_04415 0.78 +0.3 951,831 + AO353_04415 0.78 +0.5 951,831 + AO353_04415 0.78 +0.5 951,831 + AO353_04415 0.78 +0.1 951,832 - AO353_04415 0.78 +0.7 951,832 - AO353_04415 0.78 +0.5 951,889 + +0.5 951,889 + +0.6 951,890 - -0.1 951,890 - -1.2 951,890 - +0.1 951,890 - +0.3 951,916 + -0.5 951,916 + +0.3 951,916 + +0.4 951,916 + +2.3 951,916 + +1.1 951,916 + -0.2 951,916 + -1.3 951,916 + -0.9 951,916 + +0.1 951,916 + +1.2 951,917 - +0.3 951,917 - -0.1 951,917 - +1.0 951,917 - +0.6 951,917 - +0.6 951,917 - +1.2 951,948 + +0.6 951,949 - +0.2 951,972 + -0.0 951,972 + -1.0 951,972 + +0.3 951,973 - +1.1 951,973 - -0.1 951,973 - +0.8 952,070 - +1.0 952,070 - -0.7 952,070 - -0.0 952,070 - -0.3 952,150 + -0.4 952,151 - +0.1 952,151 - +0.7 952,151 - +1.4 952,169 + -0.1 952,263 - AO353_04420 0.46 -1.0 952,263 - AO353_04420 0.46 +0.5 952,313 + AO353_04420 0.69 -0.0 952,314 - AO353_04420 0.69 +2.0 952,314 - AO353_04420 0.69 -1.1 952,314 - AO353_04420 0.69 +0.9 952,356 + AO353_04420 0.89 -1.2 952,357 - AO353_04420 0.89 -0.4 952,357 - AO353_04420 0.89 +0.1 952,420 + +0.1 952,420 + +1.0 952,420 + +0.7 952,420 + +0.2 952,420 + +0.3 952,421 - +0.3 952,421 - +0.5 952,428 + -0.5 952,428 + -0.2 952,428 + -0.7 952,428 + +0.8 952,428 + +1.1 952,428 + -0.7 952,428 + +0.0 952,428 + -1.5 952,429 - AO353_04425 0.10 -0.4 952,429 - AO353_04425 0.10 +0.9 952,429 - AO353_04425 0.10 +1.2 952,429 - AO353_04425 0.10 +0.6 952,429 - AO353_04425 0.10 -0.3 952,429 - AO353_04425 0.10 +0.0 952,429 - AO353_04425 0.10 +1.5 952,481 + AO353_04425 0.20 +0.4 952,481 + AO353_04425 0.20 -0.2 952,482 - AO353_04425 0.20 -0.0 952,482 - AO353_04425 0.20 +0.3 952,482 - AO353_04425 0.20 +0.3 952,482 - AO353_04425 0.20 +1.9 952,484 + AO353_04425 0.21 +0.0 952,484 + AO353_04425 0.21 +0.9 952,484 + AO353_04425 0.21 +0.2 952,484 + AO353_04425 0.21 -0.4 952,484 + AO353_04425 0.21 +0.1 952,484 + AO353_04425 0.21 -0.6 952,485 - AO353_04425 0.21 -0.2 952,485 - AO353_04425 0.21 -0.1 952,485 - AO353_04425 0.21 -0.4 952,485 - AO353_04425 0.21 +0.3 952,485 - AO353_04425 0.21 -0.2 952,623 + AO353_04425 0.47 -0.0 952,624 - AO353_04425 0.47 -0.1 952,624 - AO353_04425 0.47 -2.1 952,624 - AO353_04425 0.47 -0.0 952,624 - AO353_04425 0.47 +0.8 952,735 + AO353_04425 0.68 -0.4 952,735 + AO353_04425 0.68 -1.0 952,735 + AO353_04425 0.68 +0.1 952,735 + AO353_04425 0.68 +0.5 952,735 + AO353_04425 0.68 +1.9 952,735 + AO353_04425 0.68 +0.4 952,735 + AO353_04425 0.68 +0.2 952,735 + AO353_04425 0.68 +0.6 952,735 + AO353_04425 0.68 +0.5 952,735 + AO353_04425 0.68 -0.7 952,735 + AO353_04425 0.68 +0.2 952,735 + AO353_04425 0.68 +1.3 952,736 - AO353_04425 0.69 -0.2 952,736 - AO353_04425 0.69 +0.6 952,736 - AO353_04425 0.69 +0.1 952,736 - AO353_04425 0.69 +0.5 952,736 - AO353_04425 0.69 -1.0 952,736 - AO353_04425 0.69 -0.1 952,736 - AO353_04425 0.69 -0.1 952,736 - AO353_04425 0.69 +1.9 952,736 - AO353_04425 0.69 +0.9 952,736 - AO353_04425 0.69 -1.9 952,736 - -1.3 952,840 + AO353_04425 0.88 +0.6 952,840 + AO353_04425 0.88 -0.4 952,841 - AO353_04425 0.89 +0.3 952,893 + -0.4 952,893 + -0.4 952,894 - +0.1 952,894 - -0.6 952,903 + -0.5 952,903 + +1.0 952,903 + +0.2 952,903 + -1.0 952,903 + -0.9 952,903 + -0.1 952,903 + +0.6 952,904 - -0.3 952,904 - -0.1 952,904 - -0.9 952,904 - -0.6 952,904 - -0.1 952,904 - +0.6 952,904 - -0.3 952,904 - +1.9 952,904 - -0.2 952,904 - -0.5 952,904 - -0.1
Or see this region's nucleotide sequence