Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04050 and AO353_04055 are separated by 293 nucleotides AO353_04055 and AO353_04060 are separated by 120 nucleotides AO353_04060 and AO353_04065 overlap by 4 nucleotides
AO353_04050: AO353_04050 - ATP-binding protein, at 870,564 to 871,658
_04050
AO353_04055: AO353_04055 - methionine--tRNA ligase, at 871,952 to 874,003
_04055
AO353_04060: AO353_04060 - NADH:quinone oxidoreductase, at 874,124 to 874,711
_04060
AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922
_04065
Position (kb) 871
872
873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 871.702 kb on - strand at 871.702 kb on - strand at 871.702 kb on - strand at 871.702 kb on - strand at 871.760 kb on + strand at 871.767 kb on - strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.852 kb on + strand at 871.852 kb on + strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.868 kb on - strand at 871.897 kb on + strand at 871.897 kb on + strand at 873.691 kb on + strand, within AO353_04055 at 873.691 kb on + strand, within AO353_04055 at 873.691 kb on + strand, within AO353_04055 at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.060 kb on + strand at 874.075 kb on + strand at 874.089 kb on + strand at 874.089 kb on + strand at 874.168 kb on + strand at 874.168 kb on + strand at 874.313 kb on + strand, within AO353_04060 at 874.313 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.390 kb on + strand, within AO353_04060 at 874.391 kb on - strand, within AO353_04060 at 874.523 kb on + strand, within AO353_04060 at 874.524 kb on - strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand at 874.537 kb on - strand, within AO353_04060 at 874.725 kb on + strand at 874.725 kb on + strand at 874.725 kb on + strand at 874.787 kb on - strand at 874.933 kb on - strand, within AO353_04065 at 874.986 kb on - strand, within AO353_04065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 871,702 - +0.7 871,702 - +0.0 871,702 - +0.8 871,702 - +0.5 871,760 + -0.2 871,767 - +0.3 871,802 + +0.1 871,802 + -0.9 871,802 + +0.3 871,802 + -0.2 871,802 + +0.1 871,803 - +0.6 871,803 - -0.1 871,803 - +0.4 871,803 - -0.1 871,803 - -1.0 871,803 - -0.5 871,803 - -0.9 871,803 - +1.6 871,804 + +0.1 871,804 + -0.8 871,804 + +1.5 871,804 + +0.2 871,804 + +0.6 871,804 + +0.5 871,804 + +0.3 871,804 + -0.9 871,805 - +1.1 871,805 - +1.4 871,805 - -0.8 871,805 - -0.2 871,805 - -0.5 871,805 - -0.5 871,805 - -1.5 871,805 - -0.6 871,852 + -0.1 871,852 + -0.1 871,853 - -0.2 871,853 - +0.1 871,853 - +0.2 871,868 - -0.3 871,897 + +1.3 871,897 + -0.2 873,691 + AO353_04055 0.85 -1.2 873,691 + AO353_04055 0.85 -0.0 873,691 + AO353_04055 0.85 -2.0 874,001 + -0.9 874,001 + -1.1 874,001 + -0.4 874,001 + -0.4 874,001 + +0.9 874,001 + +0.2 874,001 + -0.3 874,001 + -0.2 874,001 + +0.3 874,002 - +0.2 874,002 - -1.1 874,002 - +0.5 874,002 - -0.9 874,002 - -0.5 874,002 - +0.2 874,002 - +0.2 874,002 - -0.0 874,002 - +0.2 874,002 - -0.6 874,002 - -0.9 874,002 - +0.2 874,002 - +0.8 874,002 - -0.2 874,002 - +1.6 874,002 - +0.1 874,002 - -0.6 874,002 - -0.4 874,002 - -1.9 874,002 - -0.2 874,060 + -1.6 874,075 + +0.3 874,089 + +0.4 874,089 + +0.2 874,168 + -0.2 874,168 + -0.3 874,313 + AO353_04060 0.32 -1.1 874,313 + AO353_04060 0.32 -0.4 874,352 + AO353_04060 0.39 +0.5 874,352 + AO353_04060 0.39 +0.4 874,352 + AO353_04060 0.39 -0.6 874,352 + AO353_04060 0.39 +0.7 874,353 - AO353_04060 0.39 +0.6 874,353 - AO353_04060 0.39 -0.2 874,380 + AO353_04060 0.44 -1.0 874,380 + AO353_04060 0.44 +0.8 874,381 - AO353_04060 0.44 +2.6 874,381 - AO353_04060 0.44 -1.0 874,390 + AO353_04060 0.45 -1.1 874,391 - AO353_04060 0.45 +1.8 874,523 + AO353_04060 0.68 -2.6 874,524 - AO353_04060 0.68 -0.0 874,530 + AO353_04060 0.69 +1.2 874,530 + AO353_04060 0.69 +0.2 874,530 + AO353_04060 0.69 -0.2 874,536 + AO353_04060 0.70 -1.0 874,536 + AO353_04060 0.70 -0.4 874,536 + AO353_04060 0.70 +0.6 874,536 + AO353_04060 0.70 +0.6 874,536 + AO353_04060 0.70 -1.0 874,537 - AO353_04060 0.70 -0.6 874,537 - AO353_04060 0.70 +0.8 874,537 - +1.8 874,537 - AO353_04060 0.70 -0.6 874,725 + -1.2 874,725 + -1.9 874,725 + +0.8 874,787 - +0.0 874,933 - AO353_04065 0.19 -1.6 874,986 - AO353_04065 0.23 -1.2
Or see this region's nucleotide sequence