Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02315 and AO353_02320 are separated by 436 nucleotides AO353_02320 and AO353_02325 overlap by 4 nucleotides AO353_02325 and AO353_02330 are separated by 89 nucleotides
AO353_02315: AO353_02315 - 5-hydroxyisourate hydrolase, at 492,663 to 493,016
_02315
AO353_02320: AO353_02320 - allantoinase, at 493,453 to 494,379
_02320
AO353_02325: AO353_02325 - OHCU decarboxylase, at 494,376 to 494,891
_02325
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 492.465 kb on + strand at 492.465 kb on + strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.624 kb on - strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.664 kb on + strand at 492.665 kb on - strand at 492.665 kb on - strand at 492.676 kb on + strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.692 kb on - strand at 492.692 kb on - strand at 492.719 kb on - strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.808 kb on + strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.836 kb on - strand, within AO353_02315 at 492.850 kb on + strand, within AO353_02315 at 492.850 kb on + strand, within AO353_02315 at 493.001 kb on + strand at 493.001 kb on + strand at 493.001 kb on + strand at 493.076 kb on + strand at 493.076 kb on + strand at 493.076 kb on + strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.131 kb on - strand at 493.176 kb on - strand at 493.226 kb on + strand at 493.226 kb on + strand at 493.226 kb on + strand at 493.227 kb on - strand at 493.227 kb on - strand at 493.251 kb on + strand at 493.251 kb on + strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.327 kb on + strand at 493.338 kb on + strand at 493.338 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.427 kb on - strand at 493.427 kb on - strand at 493.436 kb on + strand at 493.436 kb on + strand at 493.436 kb on + strand at 493.555 kb on + strand, within AO353_02320 at 493.555 kb on + strand, within AO353_02320 at 493.556 kb on - strand, within AO353_02320 at 493.556 kb on - strand, within AO353_02320 at 493.676 kb on - strand, within AO353_02320 at 493.682 kb on - strand, within AO353_02320 at 493.682 kb on - strand, within AO353_02320 at 493.849 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.855 kb on + strand, within AO353_02320 at 493.856 kb on - strand, within AO353_02320 at 493.856 kb on - strand, within AO353_02320 at 493.856 kb on - strand, within AO353_02320 at 493.856 kb on - strand, within AO353_02320 at 493.942 kb on + strand, within AO353_02320 at 493.943 kb on - strand, within AO353_02320 at 494.003 kb on - strand, within AO353_02320 at 494.003 kb on - strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.019 kb on - strand, within AO353_02320 at 494.083 kb on + strand, within AO353_02320 at 494.084 kb on - strand, within AO353_02320 at 494.150 kb on - strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.156 kb on - strand, within AO353_02320 at 494.182 kb on + strand, within AO353_02320 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.669 kb on + strand, within AO353_02325 at 494.724 kb on + strand, within AO353_02325 at 494.762 kb on - strand, within AO353_02325 at 494.878 kb on + strand at 494.959 kb on + strand at 494.959 kb on + strand at 494.960 kb on - strand at 494.960 kb on - strand at 494.963 kb on + strand at 494.963 kb on + strand at 494.964 kb on - strand at 494.990 kb on + strand at 494.990 kb on + strand at 494.991 kb on - strand at 494.991 kb on - strand at 494.997 kb on + strand at 494.997 kb on + strand at 494.998 kb on - strand at 495.189 kb on - strand, within AO353_02330 at 495.270 kb on - strand, within AO353_02330
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 492,465 + -0.6 492,465 + +0.1 492,466 - +0.7 492,466 - +0.1 492,466 - -1.5 492,466 - +1.2 492,503 + +0.9 492,503 + -0.1 492,503 + -0.1 492,503 + +0.5 492,503 + -0.7 492,503 + +0.5 492,504 - +1.4 492,504 - -1.3 492,504 - +0.9 492,529 + -0.5 492,529 + +0.2 492,529 + +0.4 492,529 + +0.3 492,529 + +0.1 492,530 - +0.5 492,530 - +0.3 492,530 - -0.2 492,621 + -1.3 492,621 + -0.6 492,621 + -1.0 492,621 + +1.5 492,621 + +1.7 492,621 + -0.8 492,621 + -1.2 492,621 + +0.6 492,621 + -0.3 492,621 + +0.2 492,621 + -0.1 492,621 + -0.8 492,621 + -0.6 492,622 - +1.4 492,622 - -0.4 492,622 - -0.1 492,622 - +0.5 492,622 - -0.1 492,622 - -0.7 492,622 - -0.3 492,622 - -0.7 492,622 - -1.5 492,623 + +1.3 492,623 + +0.3 492,623 + -1.5 492,624 - +0.8 492,647 + +0.7 492,647 + -1.5 492,647 + +0.3 492,647 + -0.0 492,647 + +0.8 492,648 - +0.5 492,648 - -0.0 492,648 - -0.4 492,648 - -1.2 492,648 - -0.7 492,648 - -1.0 492,648 - -3.2 492,664 + +0.6 492,665 - -0.5 492,665 - -2.3 492,676 + +0.9 492,686 - +0.3 492,686 - +0.3 492,686 - +3.7 492,686 - +0.4 492,692 - +0.5 492,692 - +1.2 492,719 - AO353_02315 0.16 +0.1 492,789 + AO353_02315 0.36 -0.9 492,789 + AO353_02315 0.36 -0.2 492,789 + AO353_02315 0.36 +1.1 492,789 + AO353_02315 0.36 -0.9 492,789 + AO353_02315 0.36 +0.5 492,789 + AO353_02315 0.36 +0.1 492,789 + AO353_02315 0.36 +0.3 492,789 + AO353_02315 0.36 +0.6 492,789 + AO353_02315 0.36 +0.3 492,789 + AO353_02315 0.36 -1.0 492,789 + AO353_02315 0.36 +0.1 492,789 + AO353_02315 0.36 -0.9 492,789 + AO353_02315 0.36 -0.1 492,789 + AO353_02315 0.36 +0.8 492,790 - AO353_02315 0.36 -0.2 492,790 - AO353_02315 0.36 +0.7 492,790 - AO353_02315 0.36 -0.4 492,790 - AO353_02315 0.36 -1.4 492,790 - AO353_02315 0.36 -2.0 492,790 - AO353_02315 0.36 -0.6 492,790 - AO353_02315 0.36 -1.2 492,790 - AO353_02315 0.36 +0.9 492,790 - AO353_02315 0.36 +0.8 492,790 - AO353_02315 0.36 +1.7 492,808 + AO353_02315 0.41 -0.1 492,809 - AO353_02315 0.41 -0.6 492,809 - AO353_02315 0.41 +0.3 492,809 - AO353_02315 0.41 +0.2 492,836 - AO353_02315 0.49 +0.1 492,850 + AO353_02315 0.53 -1.2 492,850 + AO353_02315 0.53 -0.4 493,001 + -0.0 493,001 + +0.4 493,001 + +0.6 493,076 + -0.1 493,076 + -0.1 493,076 + +0.3 493,077 - +0.1 493,077 - -1.2 493,077 - +0.6 493,077 - -0.6 493,131 - +0.6 493,176 - +0.7 493,226 + -0.5 493,226 + +0.5 493,226 + +0.1 493,227 - +1.1 493,227 - +1.2 493,251 + +0.7 493,251 + -0.8 493,252 - +0.3 493,252 - -1.2 493,252 - -0.3 493,252 - +0.4 493,252 - +0.4 493,327 + +2.5 493,338 + -0.5 493,338 + +0.8 493,422 + -0.7 493,422 + +0.3 493,422 + -0.9 493,422 + +0.5 493,422 + -1.4 493,422 + -0.5 493,422 + -1.5 493,423 - -0.2 493,423 - -0.6 493,423 - -0.1 493,423 - -0.6 493,426 + +0.4 493,426 + -2.6 493,426 + +0.0 493,426 + -0.5 493,427 - -1.3 493,427 - +1.7 493,436 + +1.4 493,436 + -1.2 493,436 + -1.3 493,555 + AO353_02320 0.11 -0.6 493,555 + AO353_02320 0.11 -2.4 493,556 - AO353_02320 0.11 +0.3 493,556 - AO353_02320 0.11 +0.6 493,676 - AO353_02320 0.24 -0.2 493,682 - AO353_02320 0.25 +0.3 493,682 - AO353_02320 0.25 +1.9 493,849 + AO353_02320 0.43 -0.5 493,855 + AO353_02320 0.43 -0.7 493,855 + AO353_02320 0.43 -2.9 493,855 + AO353_02320 0.43 -1.5 493,855 + AO353_02320 0.43 -0.3 493,855 + AO353_02320 0.43 +0.7 493,855 + AO353_02320 0.43 +0.8 493,855 + AO353_02320 0.43 -1.1 493,855 + AO353_02320 0.43 +0.5 493,855 + AO353_02320 0.43 +0.1 493,856 - AO353_02320 0.43 +0.4 493,856 - AO353_02320 0.43 -1.3 493,856 - AO353_02320 0.43 -0.8 493,856 - AO353_02320 0.43 -0.2 493,942 + AO353_02320 0.53 -0.5 493,943 - AO353_02320 0.53 -1.9 494,003 - AO353_02320 0.59 -1.8 494,003 - AO353_02320 0.59 -1.3 494,017 + AO353_02320 0.61 -1.1 494,017 + AO353_02320 0.61 -0.3 494,018 - AO353_02320 0.61 +0.5 494,018 - AO353_02320 0.61 -1.4 494,018 - AO353_02320 0.61 -1.3 494,018 - AO353_02320 0.61 +0.0 494,018 - AO353_02320 0.61 -1.8 494,018 - AO353_02320 0.61 -1.1 494,018 - AO353_02320 0.61 -0.5 494,019 - AO353_02320 0.61 -3.0 494,083 + AO353_02320 0.68 -1.5 494,084 - AO353_02320 0.68 -0.9 494,150 - AO353_02320 0.75 -0.6 494,155 + AO353_02320 0.76 -0.8 494,155 + AO353_02320 0.76 +0.4 494,156 - AO353_02320 0.76 -0.3 494,182 + AO353_02320 0.79 -2.6 494,448 + AO353_02325 0.14 +0.1 494,448 + AO353_02325 0.14 -0.7 494,448 + AO353_02325 0.14 -0.0 494,448 + AO353_02325 0.14 -0.5 494,448 + AO353_02325 0.14 +1.2 494,448 + AO353_02325 0.14 +0.1 494,448 + AO353_02325 0.14 -0.8 494,449 - AO353_02325 0.14 +0.1 494,449 - AO353_02325 0.14 -0.3 494,449 - AO353_02325 0.14 -0.6 494,449 - AO353_02325 0.14 +0.6 494,449 - AO353_02325 0.14 -0.5 494,449 - AO353_02325 0.14 -0.7 494,449 - AO353_02325 0.14 +0.6 494,669 + AO353_02325 0.57 -1.1 494,724 + AO353_02325 0.67 +0.1 494,762 - AO353_02325 0.75 +0.2 494,878 + +0.9 494,959 + -0.5 494,959 + -0.9 494,960 - +0.1 494,960 - +0.7 494,963 + +0.6 494,963 + +0.2 494,964 - -0.5 494,990 + +0.4 494,990 + +0.2 494,991 - +0.2 494,991 - +0.7 494,997 + +0.8 494,997 + +2.9 494,998 - +0.3 495,189 - AO353_02330 0.21 +0.9 495,270 - AO353_02330 0.29 +0.4
Or see this region's nucleotide sequence