Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002868

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
3,240,480	+		ABIE53_002867	0.51	-1.3
3,240,480	+		ABIE53_002867	0.51	-0.3
3,240,480	+		ABIE53_002867	0.51	-0.3
3,240,480	+		ABIE53_002867	0.51	-0.8
3,240,581	+		ABIE53_002867	0.56	-1.4
3,240,582	+		ABIE53_002867	0.57	-0.7
3,240,582	+		ABIE53_002867	0.57	-0.6
3,240,582	+		ABIE53_002867	0.57	-0.2
3,240,582	+		ABIE53_002867	0.57	-0.9
3,240,583	-		ABIE53_002867	0.57	-0.4
3,240,583	-		ABIE53_002867	0.57	-0.6
3,240,583	-		ABIE53_002867	0.57	-1.0
3,240,583	-		ABIE53_002867	0.57	-0.4
3,240,684	+		ABIE53_002867	0.62	+0.6
3,240,684	+		ABIE53_002867	0.62	-1.1
3,240,684	+		ABIE53_002867	0.62	+2.6
3,240,684	+		ABIE53_002867	0.62	-1.4
3,240,684	+		ABIE53_002867	0.62	-1.2
3,240,684	+		ABIE53_002867	0.62	-0.4
3,240,685	-		ABIE53_002867	0.63	-0.2
3,240,685	-		ABIE53_002867	0.63	+0.4
3,240,685	-		ABIE53_002867	0.63	-1.3
3,240,720	+		ABIE53_002867	0.65	-1.4
3,240,720	+		ABIE53_002867	0.65	-1.2
3,240,720	+		ABIE53_002867	0.65	-0.8
3,240,720	+		ABIE53_002867	0.65	-1.1
3,240,720	+		ABIE53_002867	0.65	+0.6
3,240,720	+		ABIE53_002867	0.65	-0.2
3,240,720	+		ABIE53_002867	0.65	-0.8
3,240,720	+		ABIE53_002867	0.65	-0.2
3,240,720	+		ABIE53_002867	0.65	-1.4
3,240,720	+		ABIE53_002867	0.65	-0.9
3,240,720	+		ABIE53_002867	0.65	-0.7
3,240,721	-		ABIE53_002867	0.65	-1.3
3,240,721	-		ABIE53_002867	0.65	+0.1
3,240,721	-		ABIE53_002867	0.65	-0.4
3,240,721	-		ABIE53_002867	0.65	-0.3
3,240,771	+		ABIE53_002867	0.68	-2.0
3,240,771	+		ABIE53_002867	0.68	+0.2
3,240,772	-		ABIE53_002867	0.68	-1.8
3,240,790	-		ABIE53_002867	0.69	-0.2
3,240,909	+		ABIE53_002867	0.76	-1.8
3,240,909	+		ABIE53_002867	0.76	-0.3
3,240,909	+		ABIE53_002867	0.76	-0.0
3,240,910	-		ABIE53_002867	0.76	-0.0
3,240,910	-		ABIE53_002867	0.76	+0.1
3,240,910	-		ABIE53_002867	0.76	-0.8
3,240,910	-		ABIE53_002867	0.76	-1.3
3,240,910	-		ABIE53_002867	0.76	+1.6
3,240,910	-		ABIE53_002867	0.76	-0.4
3,240,936	+		ABIE53_002867	0.77	+2.6
3,240,936	+		ABIE53_002867	0.77	-0.8
3,240,936	+		ABIE53_002867	0.77	-0.5
3,240,936	+		ABIE53_002867	0.77	-0.9
3,240,936	+		ABIE53_002867	0.77	-0.0
3,240,936	+		ABIE53_002867	0.77	+0.6
3,240,936	+		ABIE53_002867	0.77	-0.4
3,240,948	-		ABIE53_002867	0.78	-0.0
3,240,977	+		ABIE53_002867	0.80	-1.8
3,240,977	+		ABIE53_002867	0.80	-1.0
3,240,977	+		ABIE53_002867	0.80	+1.6
3,240,978	-		ABIE53_002867	0.80	-0.9
3,241,089	+		ABIE53_002867	0.86	+1.6
3,241,225	+				-1.0
3,241,248	+				+1.0
3,241,248	+				+0.6
3,241,248	+				-0.0
3,241,249	-				-0.9
3,241,249	-				+1.6
3,241,326	+				-0.7
3,241,326	+				-2.1
3,241,326	+				-0.4
3,241,326	+				+3.1
3,241,327	-				+0.2
3,241,327	-				-0.3
3,241,327	-				+0.1
3,241,327	-				-0.6
3,241,337	+				-0.3
3,241,337	+				-2.4
3,241,337	+				+1.0
3,241,383	+				-1.0
3,241,383	+				-0.1
3,241,383	+				-0.1
3,241,418	+				-1.6
3,241,418	+				+0.1
3,241,419	-				-0.5
3,241,431	+				-0.4
3,241,444	+				+0.6
3,241,931	+		ABIE53_002868	0.62	-0.8
3,241,932	-		ABIE53_002868	0.62	-0.3
3,241,932	-		ABIE53_002868	0.62	+1.1
3,242,202	+				-0.2
3,242,202	+				-0.4
3,242,203	-				-1.0
3,242,318	+		ABIE53_002869	0.13	+0.6
3,242,318	+		ABIE53_002869	0.13	-0.2
3,242,318	+		ABIE53_002869	0.13	-0.7
3,242,318	+		ABIE53_002869	0.13	+0.2
3,242,318	+		ABIE53_002869	0.13	-0.0
3,242,338	-		ABIE53_002869	0.16	+0.8
3,242,339	+		ABIE53_002869	0.16	-0.5
3,242,339	+		ABIE53_002869	0.16	-0.3
3,242,339	+		ABIE53_002869	0.16	+1.4
3,242,357	+		ABIE53_002869	0.19	+2.6
3,242,538	-		ABIE53_002869	0.45	+0.2
3,242,538	-		ABIE53_002869	0.45	-0.4
3,242,599	-		ABIE53_002869	0.54	+0.2
3,242,600	+		ABIE53_002869	0.55	+0.1
3,242,600	+		ABIE53_002869	0.55	+1.6
3,242,600	+		ABIE53_002869	0.55	-0.1
3,242,600	+		ABIE53_002869	0.55	+0.7
3,242,600	+		ABIE53_002869	0.55	+0.6
3,242,600	+		ABIE53_002869	0.55	+0.7
3,242,601	-		ABIE53_002869	0.55	+0.1
3,242,601	-		ABIE53_002869	0.55	-0.1
3,242,679	-		ABIE53_002869	0.66	-0.2
3,242,692	+		ABIE53_002869	0.68	+1.4
3,242,692	+		ABIE53_002869	0.68	-0.3
3,242,693	-		ABIE53_002869	0.68	-1.8
3,242,693	-		ABIE53_002869	0.68	+0.2
3,242,732	+		ABIE53_002869	0.74	-0.6
3,242,732	+		ABIE53_002869	0.74	-0.2
3,242,733	-		ABIE53_002869	0.74	-0.8
3,242,733	-		ABIE53_002869	0.74	-0.4
3,242,733	-		ABIE53_002869	0.74	+0.6
3,242,733	-		ABIE53_002869	0.74	-1.4
3,242,733	-		ABIE53_002869	0.74	-1.1
3,242,733	-		ABIE53_002869	0.74	-0.0
3,242,733	-		ABIE53_002869	0.74	+0.5
3,242,829	+		ABIE53_002869	0.88	-1.2
3,242,830	-		ABIE53_002869	0.88	+0.3
3,242,830	-		ABIE53_002869	0.88	+0.4
3,242,858	+				-0.0
3,242,858	+				-1.2
3,242,858	+				+0.8
3,242,859	-				-1.0
3,242,955	+				+0.4
3,242,956	-				-0.8
3,242,956	-				+0.2
3,242,956	-				-0.3
3,242,976	+				+1.1
3,242,977	-				+0.1
3,242,977	-				-0.6
3,242,977	-				-0.6
3,242,977	-				+0.0
3,242,980	+				-1.6
3,242,980	+				-1.1
3,242,981	-				-0.8
3,243,095	-		ABIE53_002870	0.21	-1.1
3,243,206	-		ABIE53_002870	0.35	-1.4