Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15850

Experiment: D-Fructose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15860 and HMPREF1058_RS15855 are separated by 105 nucleotidesHMPREF1058_RS15855 and HMPREF1058_RS15850 overlap by 4 nucleotidesHMPREF1058_RS15850 and HMPREF1058_RS15845 are separated by 12 nucleotidesHMPREF1058_RS15845 and HMPREF1058_RS15840 overlap by 4 nucleotides HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201 _RS15860 HMPREF1058_RS15855: HMPREF1058_RS15855 - uridine kinase, at 819,307 to 819,918 _RS15855 HMPREF1058_RS15850: HMPREF1058_RS15850 - transglycosylase SLT domain-containing protein, at 819,915 to 821,294 _RS15850 HMPREF1058_RS15845: HMPREF1058_RS15845 - YjbH domain-containing protein, at 821,307 to 822,119 _RS15845 HMPREF1058_RS15840: HMPREF1058_RS15840 - glycosyltransferase family 4 protein, at 822,116 to 823,204 _RS15840 Position (kb) 819 820 821 822Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 819.074 kb on - strand, within HMPREF1058_RS15860at 819.074 kb on - strand, within HMPREF1058_RS15860at 819.084 kb on + strand, within HMPREF1058_RS15860at 819.091 kb on + strand, within HMPREF1058_RS15860at 819.124 kb on - strand, within HMPREF1058_RS15860at 819.258 kb on + strandat 819.300 kb on + strandat 819.300 kb on + strandat 819.300 kb on + strandat 819.301 kb on - strandat 819.307 kb on - strandat 819.312 kb on - strandat 819.357 kb on - strandat 819.418 kb on + strand, within HMPREF1058_RS15855at 819.419 kb on - strand, within HMPREF1058_RS15855at 819.421 kb on + strand, within HMPREF1058_RS15855at 819.421 kb on + strand, within HMPREF1058_RS15855at 819.422 kb on - strand, within HMPREF1058_RS15855at 819.424 kb on - strand, within HMPREF1058_RS15855at 819.456 kb on + strand, within HMPREF1058_RS15855at 819.562 kb on + strand, within HMPREF1058_RS15855at 819.563 kb on - strand, within HMPREF1058_RS15855at 819.566 kb on + strand, within HMPREF1058_RS15855at 819.566 kb on + strand, within HMPREF1058_RS15855at 819.569 kb on + strand, within HMPREF1058_RS15855at 819.573 kb on + strand, within HMPREF1058_RS15855at 819.643 kb on + strand, within HMPREF1058_RS15855at 819.819 kb on + strand, within HMPREF1058_RS15855at 819.819 kb on + strand, within HMPREF1058_RS15855at 819.841 kb on - strand, within HMPREF1058_RS15855at 819.841 kb on - strand, within HMPREF1058_RS15855at 819.844 kb on - strand, within HMPREF1058_RS15855at 819.890 kb on + strandat 819.950 kb on - strandat 820.016 kb on - strandat 820.218 kb on + strand, within HMPREF1058_RS15850at 820.275 kb on - strand, within HMPREF1058_RS15850at 820.349 kb on - strand, within HMPREF1058_RS15850at 820.365 kb on + strand, within HMPREF1058_RS15850at 820.370 kb on - strand, within HMPREF1058_RS15850at 820.383 kb on + strand, within HMPREF1058_RS15850at 820.409 kb on + strand, within HMPREF1058_RS15850at 820.427 kb on + strand, within HMPREF1058_RS15850at 820.548 kb on + strand, within HMPREF1058_RS15850at 820.548 kb on + strand, within HMPREF1058_RS15850at 820.610 kb on - strand, within HMPREF1058_RS15850at 820.613 kb on + strand, within HMPREF1058_RS15850at 820.646 kb on + strand, within HMPREF1058_RS15850at 820.647 kb on - strand, within HMPREF1058_RS15850at 820.781 kb on - strand, within HMPREF1058_RS15850at 820.791 kb on + strand, within HMPREF1058_RS15850at 820.967 kb on + strand, within HMPREF1058_RS15850at 820.967 kb on + strand, within HMPREF1058_RS15850at 820.968 kb on - strand, within HMPREF1058_RS15850at 820.969 kb on + strand, within HMPREF1058_RS15850at 820.987 kb on - strand, within HMPREF1058_RS15850at 820.987 kb on - strand, within HMPREF1058_RS15850at 821.075 kb on - strand, within HMPREF1058_RS15850at 821.084 kb on - strand, within HMPREF1058_RS15850at 821.112 kb on + strand, within HMPREF1058_RS15850at 821.124 kb on - strand, within HMPREF1058_RS15850at 821.127 kb on + strand, within HMPREF1058_RS15850at 821.127 kb on + strand, within HMPREF1058_RS15850at 821.128 kb on - strand, within HMPREF1058_RS15850at 821.128 kb on - strand, within HMPREF1058_RS15850at 821.131 kb on + strand, within HMPREF1058_RS15850at 821.150 kb on + strand, within HMPREF1058_RS15850at 821.151 kb on - strand, within HMPREF1058_RS15850at 821.155 kb on - strand, within HMPREF1058_RS15850at 821.156 kb on + strand, within HMPREF1058_RS15850at 821.156 kb on + strand, within HMPREF1058_RS15850at 821.156 kb on + strand, within HMPREF1058_RS15850at 821.385 kb on - strandat 821.405 kb on - strand, within HMPREF1058_RS15845at 821.415 kb on + strand, within HMPREF1058_RS15845at 821.415 kb on + strand, within HMPREF1058_RS15845at 821.415 kb on + strand, within HMPREF1058_RS15845at 821.415 kb on + strand, within HMPREF1058_RS15845at 821.416 kb on - strand, within HMPREF1058_RS15845at 821.416 kb on - strand, within HMPREF1058_RS15845at 821.416 kb on - strand, within HMPREF1058_RS15845at 821.417 kb on + strand, within HMPREF1058_RS15845at 821.437 kb on + strand, within HMPREF1058_RS15845at 821.510 kb on + strand, within HMPREF1058_RS15845at 821.517 kb on + strand, within HMPREF1058_RS15845at 821.518 kb on - strand, within HMPREF1058_RS15845at 821.540 kb on - strand, within HMPREF1058_RS15845at 821.557 kb on + strand, within HMPREF1058_RS15845at 821.557 kb on + strand, within HMPREF1058_RS15845at 821.563 kb on + strand, within HMPREF1058_RS15845at 821.563 kb on + strand, within HMPREF1058_RS15845at 821.564 kb on - strand, within HMPREF1058_RS15845at 821.581 kb on - strand, within HMPREF1058_RS15845at 821.591 kb on + strand, within HMPREF1058_RS15845at 821.592 kb on - strand, within HMPREF1058_RS15845at 821.600 kb on + strand, within HMPREF1058_RS15845at 821.615 kb on + strandat 821.661 kb on - strand, within HMPREF1058_RS15845at 821.669 kb on + strand, within HMPREF1058_RS15845at 821.675 kb on + strand, within HMPREF1058_RS15845at 821.840 kb on - strand, within HMPREF1058_RS15845at 821.877 kb on - strand, within HMPREF1058_RS15845at 821.877 kb on - strand, within HMPREF1058_RS15845at 821.878 kb on + strand, within HMPREF1058_RS15845at 821.909 kb on + strand, within HMPREF1058_RS15845at 821.920 kb on + strand, within HMPREF1058_RS15845at 821.925 kb on - strand, within HMPREF1058_RS15845at 821.935 kb on + strand, within HMPREF1058_RS15845at 822.158 kb on + strandat 822.174 kb on + strandat 822.174 kb on + strandat 822.195 kb on - strandat 822.248 kb on + strand, within HMPREF1058_RS15840at 822.249 kb on - strand, within HMPREF1058_RS15840

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose 20 mM (C)
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819,074 - HMPREF1058_RS15860 0.57 +0.7
819,074 - HMPREF1058_RS15860 0.57 -0.3
819,084 + HMPREF1058_RS15860 0.61 +0.5
819,091 + HMPREF1058_RS15860 0.63 -0.1
819,124 - HMPREF1058_RS15860 0.74 -0.6
819,258 + -0.8
819,300 + -3.2
819,300 + -1.9
819,300 + -1.2
819,301 - -1.5
819,307 - -2.7
819,312 - -4.3
819,357 - -1.0
819,418 + HMPREF1058_RS15855 0.18 -3.7
819,419 - HMPREF1058_RS15855 0.18 -4.5
819,421 + HMPREF1058_RS15855 0.19 -2.9
819,421 + HMPREF1058_RS15855 0.19 +1.9
819,422 - HMPREF1058_RS15855 0.19 -0.2
819,424 - HMPREF1058_RS15855 0.19 -1.9
819,456 + HMPREF1058_RS15855 0.24 -1.8
819,562 + HMPREF1058_RS15855 0.42 -1.5
819,563 - HMPREF1058_RS15855 0.42 -3.5
819,566 + HMPREF1058_RS15855 0.42 -2.0
819,566 + HMPREF1058_RS15855 0.42 -1.9
819,569 + HMPREF1058_RS15855 0.43 -1.6
819,573 + HMPREF1058_RS15855 0.43 -1.4
819,643 + HMPREF1058_RS15855 0.55 -2.4
819,819 + HMPREF1058_RS15855 0.84 -1.9
819,819 + HMPREF1058_RS15855 0.84 -1.6
819,841 - HMPREF1058_RS15855 0.87 -1.6
819,841 - HMPREF1058_RS15855 0.87 -2.1
819,844 - HMPREF1058_RS15855 0.88 -1.7
819,890 + -1.7
819,950 - -1.0
820,016 - -0.6
820,218 + HMPREF1058_RS15850 0.22 -1.7
820,275 - HMPREF1058_RS15850 0.26 +0.9
820,349 - HMPREF1058_RS15850 0.31 -2.5
820,365 + HMPREF1058_RS15850 0.33 -1.9
820,370 - HMPREF1058_RS15850 0.33 -0.5
820,383 + HMPREF1058_RS15850 0.34 -1.0
820,409 + HMPREF1058_RS15850 0.36 -0.9
820,427 + HMPREF1058_RS15850 0.37 -0.5
820,548 + HMPREF1058_RS15850 0.46 +0.1
820,548 + HMPREF1058_RS15850 0.46 -0.5
820,610 - HMPREF1058_RS15850 0.50 -1.0
820,613 + HMPREF1058_RS15850 0.51 -1.3
820,646 + HMPREF1058_RS15850 0.53 +0.4
820,647 - HMPREF1058_RS15850 0.53 -1.3
820,781 - HMPREF1058_RS15850 0.63 -1.9
820,791 + HMPREF1058_RS15850 0.63 -2.2
820,967 + HMPREF1058_RS15850 0.76 -1.8
820,967 + HMPREF1058_RS15850 0.76 -0.1
820,968 - HMPREF1058_RS15850 0.76 -0.8
820,969 + HMPREF1058_RS15850 0.76 +0.3
820,987 - HMPREF1058_RS15850 0.78 -1.5
820,987 - HMPREF1058_RS15850 0.78 -0.4
821,075 - HMPREF1058_RS15850 0.84 -4.3
821,084 - HMPREF1058_RS15850 0.85 -1.5
821,112 + HMPREF1058_RS15850 0.87 -2.4
821,124 - HMPREF1058_RS15850 0.88 -0.3
821,127 + HMPREF1058_RS15850 0.88 -2.2
821,127 + HMPREF1058_RS15850 0.88 -0.9
821,128 - HMPREF1058_RS15850 0.88 -2.5
821,128 - HMPREF1058_RS15850 0.88 -0.9
821,131 + HMPREF1058_RS15850 0.88 -0.6
821,150 + HMPREF1058_RS15850 0.89 +0.9
821,151 - HMPREF1058_RS15850 0.90 -0.8
821,155 - HMPREF1058_RS15850 0.90 -0.5
821,156 + HMPREF1058_RS15850 0.90 -1.1
821,156 + HMPREF1058_RS15850 0.90 +0.0
821,156 + HMPREF1058_RS15850 0.90 -0.9
821,385 - -1.4
821,405 - HMPREF1058_RS15845 0.12 +0.0
821,415 + HMPREF1058_RS15845 0.13 +0.1
821,415 + HMPREF1058_RS15845 0.13 -2.2
821,415 + HMPREF1058_RS15845 0.13 -0.6
821,415 + HMPREF1058_RS15845 0.13 +0.1
821,416 - HMPREF1058_RS15845 0.13 +1.7
821,416 - HMPREF1058_RS15845 0.13 -1.7
821,416 - HMPREF1058_RS15845 0.13 -0.4
821,417 + HMPREF1058_RS15845 0.14 -0.1
821,437 + HMPREF1058_RS15845 0.16 -1.6
821,510 + HMPREF1058_RS15845 0.25 -0.0
821,517 + HMPREF1058_RS15845 0.26 +0.9
821,518 - HMPREF1058_RS15845 0.26 -2.4
821,540 - HMPREF1058_RS15845 0.29 -0.1
821,557 + HMPREF1058_RS15845 0.31 +0.2
821,557 + HMPREF1058_RS15845 0.31 +0.4
821,563 + HMPREF1058_RS15845 0.31 -0.6
821,563 + HMPREF1058_RS15845 0.31 -2.9
821,564 - HMPREF1058_RS15845 0.32 -0.2
821,581 - HMPREF1058_RS15845 0.34 -1.4
821,591 + HMPREF1058_RS15845 0.35 -0.4
821,592 - HMPREF1058_RS15845 0.35 -1.4
821,600 + HMPREF1058_RS15845 0.36 -0.2
821,615 + +0.6
821,661 - HMPREF1058_RS15845 0.44 +0.2
821,669 + HMPREF1058_RS15845 0.45 -1.5
821,675 + HMPREF1058_RS15845 0.45 +0.4
821,840 - HMPREF1058_RS15845 0.66 +0.3
821,877 - HMPREF1058_RS15845 0.70 -0.3
821,877 - HMPREF1058_RS15845 0.70 +0.0
821,878 + HMPREF1058_RS15845 0.70 +0.1
821,909 + HMPREF1058_RS15845 0.74 +0.6
821,920 + HMPREF1058_RS15845 0.75 +0.4
821,925 - HMPREF1058_RS15845 0.76 +2.2
821,935 + HMPREF1058_RS15845 0.77 +0.1
822,158 + +0.5
822,174 + -0.6
822,174 + +0.4
822,195 - -0.2
822,248 + HMPREF1058_RS15840 0.12 -1.9
822,249 - HMPREF1058_RS15840 0.12 +0.7

Or see this region's nucleotide sequence