Experiment: D-Fructose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06615 and HMPREF1058_RS06610 overlap by 1 nucleotides HMPREF1058_RS06610 and HMPREF1058_RS06605 are separated by 148 nucleotides HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides
HMPREF1058_RS06615: HMPREF1058_RS06615 - GDP-mannose 4,6-dehydratase, at 436,785 to 437,867
_RS06615
HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943
_RS06610
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.927 kb on - strand, within HMPREF1058_RS06615 at 437.016 kb on - strand, within HMPREF1058_RS06615 at 437.048 kb on + strand, within HMPREF1058_RS06615 at 437.133 kb on - strand, within HMPREF1058_RS06615 at 437.151 kb on - strand at 437.324 kb on + strand, within HMPREF1058_RS06615 at 437.493 kb on + strand, within HMPREF1058_RS06615 at 437.504 kb on + strand, within HMPREF1058_RS06615 at 437.505 kb on - strand, within HMPREF1058_RS06615 at 437.562 kb on + strand, within HMPREF1058_RS06615 at 437.563 kb on - strand, within HMPREF1058_RS06615 at 437.586 kb on - strand, within HMPREF1058_RS06615 at 437.697 kb on + strand, within HMPREF1058_RS06615 at 437.819 kb on + strand at 437.865 kb on + strand at 437.886 kb on + strand at 437.886 kb on + strand at 437.887 kb on - strand at 437.889 kb on - strand at 437.889 kb on - strand at 437.923 kb on + strand at 437.954 kb on - strand at 437.954 kb on - strand at 438.042 kb on - strand, within HMPREF1058_RS06610 at 438.166 kb on - strand, within HMPREF1058_RS06610 at 438.260 kb on + strand, within HMPREF1058_RS06610 at 438.261 kb on - strand, within HMPREF1058_RS06610 at 438.263 kb on - strand, within HMPREF1058_RS06610 at 438.275 kb on + strand, within HMPREF1058_RS06610 at 438.342 kb on - strand, within HMPREF1058_RS06610 at 438.383 kb on - strand, within HMPREF1058_RS06610 at 438.484 kb on + strand, within HMPREF1058_RS06610 at 438.579 kb on + strand, within HMPREF1058_RS06610 at 438.650 kb on + strand, within HMPREF1058_RS06610 at 438.651 kb on - strand, within HMPREF1058_RS06610 at 438.651 kb on - strand, within HMPREF1058_RS06610 at 438.684 kb on - strand, within HMPREF1058_RS06610 at 438.838 kb on + strand at 438.894 kb on + strand at 438.895 kb on - strand at 438.917 kb on + strand at 438.934 kb on + strand at 438.958 kb on - strand at 439.009 kb on + strand at 439.041 kb on + strand at 439.042 kb on - strand at 439.121 kb on - strand at 439.157 kb on + strand, within HMPREF1058_RS06605 at 439.158 kb on - strand, within HMPREF1058_RS06605 at 439.160 kb on - strand, within HMPREF1058_RS06605 at 439.236 kb on + strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose 20 mM (C) remove 436,927 - HMPREF1058_RS06615 0.13 +1.0 437,016 - HMPREF1058_RS06615 0.21 -1.7 437,048 + HMPREF1058_RS06615 0.24 -1.6 437,133 - HMPREF1058_RS06615 0.32 -1.0 437,151 - +1.0 437,324 + HMPREF1058_RS06615 0.50 -2.7 437,493 + HMPREF1058_RS06615 0.65 -1.7 437,504 + HMPREF1058_RS06615 0.66 -1.4 437,505 - HMPREF1058_RS06615 0.66 -0.1 437,562 + HMPREF1058_RS06615 0.72 -1.2 437,563 - HMPREF1058_RS06615 0.72 -0.8 437,586 - HMPREF1058_RS06615 0.74 -1.4 437,697 + HMPREF1058_RS06615 0.84 -1.8 437,819 + +0.2 437,865 + -1.6 437,886 + -0.6 437,886 + -1.7 437,887 - -1.1 437,889 - -0.8 437,889 - -1.1 437,923 + -2.3 437,954 - -1.7 437,954 - -0.8 438,042 - HMPREF1058_RS06610 0.16 -1.1 438,166 - HMPREF1058_RS06610 0.28 -1.7 438,260 + HMPREF1058_RS06610 0.36 -1.8 438,261 - HMPREF1058_RS06610 0.37 +1.0 438,263 - HMPREF1058_RS06610 0.37 -1.7 438,275 + HMPREF1058_RS06610 0.38 -0.5 438,342 - HMPREF1058_RS06610 0.44 -1.1 438,383 - HMPREF1058_RS06610 0.48 -2.9 438,484 + HMPREF1058_RS06610 0.57 -2.0 438,579 + HMPREF1058_RS06610 0.66 -1.4 438,650 + HMPREF1058_RS06610 0.73 -0.8 438,651 - HMPREF1058_RS06610 0.73 -1.6 438,651 - HMPREF1058_RS06610 0.73 -2.5 438,684 - HMPREF1058_RS06610 0.76 -1.4 438,838 + -0.8 438,894 + +0.1 438,895 - -1.2 438,917 + -0.6 438,934 + +0.1 438,958 - +0.0 439,009 + -0.3 439,041 + -0.6 439,042 - -0.5 439,121 - -0.2 439,157 + HMPREF1058_RS06605 0.13 -0.5 439,158 - HMPREF1058_RS06605 0.13 +0.2 439,160 - HMPREF1058_RS06605 0.13 -0.7 439,236 + HMPREF1058_RS06605 0.29 -0.2 439,237 - HMPREF1058_RS06605 0.29 +1.7 439,237 - HMPREF1058_RS06605 0.29 +0.1 439,237 - HMPREF1058_RS06605 0.29 -0.2 439,265 + HMPREF1058_RS06605 0.34 -0.4 439,265 + HMPREF1058_RS06605 0.34 -0.1 439,347 - HMPREF1058_RS06605 0.51 -1.3 439,485 - HMPREF1058_RS06605 0.78 -0.3 439,487 - HMPREF1058_RS06605 0.78 -0.2 439,487 - HMPREF1058_RS06605 0.78 +0.3 439,487 - HMPREF1058_RS06605 0.78 +0.4 439,487 - HMPREF1058_RS06605 0.78 -2.7 439,577 + -0.1 439,578 - -0.4 439,578 - +0.7 439,716 - -1.3 439,731 - HMPREF1058_RS06600 0.11 -1.9 439,829 - HMPREF1058_RS06600 0.26 -1.8 439,848 + HMPREF1058_RS06600 0.29 -1.6
Or see this region's nucleotide sequence