Strain Fitness in Rahnella sp. WP5 around EX31_RS10270

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10265 and EX31_RS10270 overlap by 1 nucleotidesEX31_RS10270 and EX31_RS10275 are separated by 22 nucleotides EX31_RS10265: EX31_RS10265 - alpha-glucosidase, at 265,006 to 266,664 _RS10265 EX31_RS10270: EX31_RS10270 - alpha-glucosidase, at 266,664 to 268,319 _RS10270 EX31_RS10275: EX31_RS10275 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 268,342 to 269,451 _RS10275 Position (kb) 266 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 265.694 kb on + strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.747 kb on - strand, within EX31_RS10265at 265.754 kb on - strand, within EX31_RS10265at 265.814 kb on - strand, within EX31_RS10265at 265.958 kb on + strand, within EX31_RS10265at 265.958 kb on + strand, within EX31_RS10265at 265.976 kb on + strand, within EX31_RS10265at 266.006 kb on + strand, within EX31_RS10265at 266.068 kb on - strand, within EX31_RS10265at 266.123 kb on + strand, within EX31_RS10265at 266.188 kb on + strand, within EX31_RS10265at 266.189 kb on - strand, within EX31_RS10265at 266.216 kb on + strand, within EX31_RS10265at 266.291 kb on + strand, within EX31_RS10265at 266.291 kb on + strand, within EX31_RS10265at 266.292 kb on - strand, within EX31_RS10265at 266.358 kb on + strand, within EX31_RS10265at 266.358 kb on + strand, within EX31_RS10265at 266.358 kb on + strand, within EX31_RS10265at 266.359 kb on - strand, within EX31_RS10265at 266.465 kb on + strand, within EX31_RS10265at 266.507 kb on + strandat 266.508 kb on - strandat 266.553 kb on - strandat 266.624 kb on + strandat 266.624 kb on + strandat 266.682 kb on + strandat 266.934 kb on - strand, within EX31_RS10270at 266.934 kb on - strand, within EX31_RS10270at 267.012 kb on - strand, within EX31_RS10270at 267.013 kb on + strand, within EX31_RS10270at 267.014 kb on - strand, within EX31_RS10270at 267.051 kb on - strand, within EX31_RS10270at 267.256 kb on + strand, within EX31_RS10270at 267.595 kb on - strand, within EX31_RS10270at 267.640 kb on + strand, within EX31_RS10270at 267.657 kb on - strand, within EX31_RS10270at 267.774 kb on + strand, within EX31_RS10270at 267.775 kb on - strand, within EX31_RS10270at 267.775 kb on - strand, within EX31_RS10270at 267.775 kb on - strand, within EX31_RS10270at 267.775 kb on - strand, within EX31_RS10270at 267.775 kb on - strand, within EX31_RS10270at 267.829 kb on + strand, within EX31_RS10270at 267.830 kb on - strand, within EX31_RS10270at 267.832 kb on + strand, within EX31_RS10270at 267.833 kb on - strand, within EX31_RS10270at 267.932 kb on - strand, within EX31_RS10270at 267.932 kb on - strand, within EX31_RS10270at 267.944 kb on - strand, within EX31_RS10270at 268.020 kb on - strand, within EX31_RS10270at 268.097 kb on + strand, within EX31_RS10270at 268.120 kb on + strand, within EX31_RS10270at 268.121 kb on - strand, within EX31_RS10270at 268.273 kb on + strandat 268.310 kb on + strandat 268.311 kb on - strandat 268.344 kb on - strandat 268.397 kb on + strandat 268.505 kb on + strand, within EX31_RS10275at 268.505 kb on + strand, within EX31_RS10275at 268.506 kb on - strand, within EX31_RS10275at 268.506 kb on - strand, within EX31_RS10275at 268.587 kb on + strand, within EX31_RS10275at 268.603 kb on - strand, within EX31_RS10275at 268.784 kb on + strand, within EX31_RS10275at 268.839 kb on + strand, within EX31_RS10275at 268.840 kb on - strand, within EX31_RS10275at 268.840 kb on - strand, within EX31_RS10275at 268.883 kb on + strand, within EX31_RS10275at 268.883 kb on + strand, within EX31_RS10275at 268.883 kb on + strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.884 kb on - strand, within EX31_RS10275at 268.888 kb on - strand, within EX31_RS10275at 268.888 kb on - strand, within EX31_RS10275at 268.888 kb on - strand, within EX31_RS10275at 268.888 kb on - strand, within EX31_RS10275at 269.087 kb on - strand, within EX31_RS10275at 269.091 kb on + strand, within EX31_RS10275at 269.091 kb on + strand, within EX31_RS10275at 269.164 kb on - strand, within EX31_RS10275at 269.164 kb on - strand, within EX31_RS10275at 269.199 kb on - strand, within EX31_RS10275at 269.199 kb on - strand, within EX31_RS10275at 269.199 kb on - strand, within EX31_RS10275at 269.209 kb on + strand, within EX31_RS10275at 269.210 kb on - strand, within EX31_RS10275at 269.210 kb on - strand, within EX31_RS10275at 269.210 kb on - strand, within EX31_RS10275at 269.252 kb on + strand, within EX31_RS10275at 269.252 kb on + strand, within EX31_RS10275at 269.253 kb on - strand, within EX31_RS10275at 269.253 kb on - strand, within EX31_RS10275at 269.266 kb on - strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.267 kb on + strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.268 kb on - strand, within EX31_RS10275at 269.284 kb on + strand, within EX31_RS10275at 269.284 kb on + strand, within EX31_RS10275at 269.284 kb on + strand, within EX31_RS10275at 269.285 kb on - strand, within EX31_RS10275at 269.285 kb on - strand, within EX31_RS10275at 269.285 kb on - strand, within EX31_RS10275at 269.314 kb on + strand, within EX31_RS10275at 269.315 kb on - strand, within EX31_RS10275at 269.315 kb on - strand, within EX31_RS10275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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265,694 + EX31_RS10265 0.41 -0.2
265,695 - EX31_RS10265 0.42 -1.3
265,695 - EX31_RS10265 0.42 -1.4
265,695 - EX31_RS10265 0.42 +1.9
265,747 - EX31_RS10265 0.45 +0.4
265,754 - EX31_RS10265 0.45 -0.9
265,814 - EX31_RS10265 0.49 +0.2
265,958 + EX31_RS10265 0.57 -0.7
265,958 + EX31_RS10265 0.57 +0.3
265,976 + EX31_RS10265 0.58 -0.0
266,006 + EX31_RS10265 0.60 -1.4
266,068 - EX31_RS10265 0.64 -1.2
266,123 + EX31_RS10265 0.67 +1.3
266,188 + EX31_RS10265 0.71 -0.0
266,189 - EX31_RS10265 0.71 +0.2
266,216 + EX31_RS10265 0.73 +1.3
266,291 + EX31_RS10265 0.77 -0.4
266,291 + EX31_RS10265 0.77 -0.2
266,292 - EX31_RS10265 0.78 -2.5
266,358 + EX31_RS10265 0.81 +0.8
266,358 + EX31_RS10265 0.81 +1.4
266,358 + EX31_RS10265 0.81 -0.6
266,359 - EX31_RS10265 0.82 +0.6
266,465 + EX31_RS10265 0.88 +0.7
266,507 + +0.7
266,508 - -1.0
266,553 - +1.1
266,624 + -0.3
266,624 + -1.2
266,682 + +0.8
266,934 - EX31_RS10270 0.16 -0.4
266,934 - EX31_RS10270 0.16 +0.6
267,012 - EX31_RS10270 0.21 +2.0
267,013 + EX31_RS10270 0.21 -1.8
267,014 - EX31_RS10270 0.21 +1.1
267,051 - EX31_RS10270 0.23 +0.5
267,256 + EX31_RS10270 0.36 -1.2
267,595 - EX31_RS10270 0.56 +0.0
267,640 + EX31_RS10270 0.59 -0.1
267,657 - EX31_RS10270 0.60 +2.6
267,774 + EX31_RS10270 0.67 -0.4
267,775 - EX31_RS10270 0.67 -0.8
267,775 - EX31_RS10270 0.67 -0.2
267,775 - EX31_RS10270 0.67 -1.7
267,775 - EX31_RS10270 0.67 -1.4
267,775 - EX31_RS10270 0.67 +0.9
267,829 + EX31_RS10270 0.70 -0.4
267,830 - EX31_RS10270 0.70 -0.7
267,832 + EX31_RS10270 0.71 -0.6
267,833 - EX31_RS10270 0.71 -1.1
267,932 - EX31_RS10270 0.77 +0.6
267,932 - EX31_RS10270 0.77 +0.3
267,944 - EX31_RS10270 0.77 +0.6
268,020 - EX31_RS10270 0.82 -0.3
268,097 + EX31_RS10270 0.87 +1.0
268,120 + EX31_RS10270 0.88 -1.2
268,121 - EX31_RS10270 0.88 -0.5
268,273 + +0.2
268,310 + +0.4
268,311 - +1.0
268,344 - +0.8
268,397 + +1.2
268,505 + EX31_RS10275 0.15 +1.0
268,505 + EX31_RS10275 0.15 +0.4
268,506 - EX31_RS10275 0.15 +0.3
268,506 - EX31_RS10275 0.15 -1.2
268,587 + EX31_RS10275 0.22 +0.8
268,603 - EX31_RS10275 0.24 -2.4
268,784 + EX31_RS10275 0.40 -1.8
268,839 + EX31_RS10275 0.45 -2.8
268,840 - EX31_RS10275 0.45 -0.4
268,840 - EX31_RS10275 0.45 +1.7
268,883 + EX31_RS10275 0.49 -0.4
268,883 + EX31_RS10275 0.49 -0.8
268,883 + EX31_RS10275 0.49 +0.6
268,884 - EX31_RS10275 0.49 -0.4
268,884 - EX31_RS10275 0.49 +2.0
268,884 - EX31_RS10275 0.49 -0.9
268,884 - EX31_RS10275 0.49 -0.3
268,884 - EX31_RS10275 0.49 -1.2
268,884 - EX31_RS10275 0.49 -0.8
268,884 - EX31_RS10275 0.49 +2.4
268,884 - EX31_RS10275 0.49 -1.8
268,888 - EX31_RS10275 0.49 -0.3
268,888 - EX31_RS10275 0.49 -0.3
268,888 - EX31_RS10275 0.49 +1.1
268,888 - EX31_RS10275 0.49 -0.8
269,087 - EX31_RS10275 0.67 +1.4
269,091 + EX31_RS10275 0.67 +0.8
269,091 + EX31_RS10275 0.67 +1.9
269,164 - EX31_RS10275 0.74 -0.2
269,164 - EX31_RS10275 0.74 -1.1
269,199 - EX31_RS10275 0.77 +1.0
269,199 - EX31_RS10275 0.77 -0.0
269,199 - EX31_RS10275 0.77 +2.6
269,209 + EX31_RS10275 0.78 +1.6
269,210 - EX31_RS10275 0.78 -0.5
269,210 - EX31_RS10275 0.78 -0.5
269,210 - EX31_RS10275 0.78 +1.0
269,252 + EX31_RS10275 0.82 +0.5
269,252 + EX31_RS10275 0.82 -1.8
269,253 - EX31_RS10275 0.82 +1.1
269,253 - EX31_RS10275 0.82 -0.1
269,266 - EX31_RS10275 0.83 +0.4
269,267 + EX31_RS10275 0.83 +0.4
269,267 + EX31_RS10275 0.83 +0.2
269,267 + EX31_RS10275 0.83 -0.6
269,267 + EX31_RS10275 0.83 -1.0
269,267 + EX31_RS10275 0.83 -0.4
269,267 + EX31_RS10275 0.83 +2.0
269,267 + EX31_RS10275 0.83 -2.1
269,268 - EX31_RS10275 0.83 +1.1
269,268 - EX31_RS10275 0.83 -0.0
269,268 - EX31_RS10275 0.83 +0.6
269,268 - EX31_RS10275 0.83 -1.0
269,268 - EX31_RS10275 0.83 +1.1
269,268 - EX31_RS10275 0.83 +1.2
269,268 - EX31_RS10275 0.83 +0.6
269,268 - EX31_RS10275 0.83 -1.6
269,268 - EX31_RS10275 0.83 +3.6
269,268 - EX31_RS10275 0.83 +2.6
269,268 - EX31_RS10275 0.83 -0.6
269,268 - EX31_RS10275 0.83 +0.2
269,284 + EX31_RS10275 0.85 +0.6
269,284 + EX31_RS10275 0.85 -0.0
269,284 + EX31_RS10275 0.85 +0.6
269,285 - EX31_RS10275 0.85 -0.0
269,285 - EX31_RS10275 0.85 +0.2
269,285 - EX31_RS10275 0.85 -0.0
269,314 + EX31_RS10275 0.88 +1.3
269,315 - EX31_RS10275 0.88 -0.1
269,315 - EX31_RS10275 0.88 +0.8

Or see this region's nucleotide sequence