Strain Fitness in Rahnella sp. WP5 around EX31_RS05720

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05715 and EX31_RS05720 are separated by 122 nucleotidesEX31_RS05720 and EX31_RS05725 are separated by 87 nucleotidesEX31_RS05725 and EX31_RS05730 are separated by 131 nucleotides EX31_RS05715: EX31_RS05715 - benzoate/H(+) symporter BenE family transporter, at 293,934 to 295,136 _RS05715 EX31_RS05720: EX31_RS05720 - L-idonate 5-dehydrogenase, at 295,259 to 296,290 _RS05720 EX31_RS05725: EX31_RS05725 - DJ-1/PfpI family protein, at 296,378 to 296,974 _RS05725 EX31_RS05730: EX31_RS05730 - isochorismatase family protein, at 297,106 to 297,660 _RS05730 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.281 kb on - strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.300 kb on + strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.301 kb on - strand, within EX31_RS05715at 294.368 kb on + strand, within EX31_RS05715at 294.369 kb on - strand, within EX31_RS05715at 294.369 kb on - strand, within EX31_RS05715at 294.369 kb on - strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.417 kb on + strand, within EX31_RS05715at 294.418 kb on - strand, within EX31_RS05715at 294.457 kb on + strand, within EX31_RS05715at 294.494 kb on - strand, within EX31_RS05715at 294.504 kb on - strand, within EX31_RS05715at 294.504 kb on - strand, within EX31_RS05715at 294.504 kb on - strand, within EX31_RS05715at 294.734 kb on + strand, within EX31_RS05715at 294.743 kb on + strand, within EX31_RS05715at 294.771 kb on - strand, within EX31_RS05715at 294.807 kb on + strand, within EX31_RS05715at 294.807 kb on + strand, within EX31_RS05715at 294.807 kb on + strand, within EX31_RS05715at 294.807 kb on + strand, within EX31_RS05715at 294.807 kb on + strand, within EX31_RS05715at 294.808 kb on - strand, within EX31_RS05715at 294.808 kb on - strand, within EX31_RS05715at 294.808 kb on - strand, within EX31_RS05715at 294.809 kb on + strand, within EX31_RS05715at 294.809 kb on + strand, within EX31_RS05715at 294.810 kb on - strand, within EX31_RS05715at 294.810 kb on - strand, within EX31_RS05715at 294.810 kb on - strand, within EX31_RS05715at 294.810 kb on - strand, within EX31_RS05715at 294.810 kb on - strand, within EX31_RS05715at 294.837 kb on + strand, within EX31_RS05715at 294.837 kb on + strand, within EX31_RS05715at 294.882 kb on - strand, within EX31_RS05715at 294.998 kb on + strand, within EX31_RS05715at 295.076 kb on - strandat 295.149 kb on + strandat 295.200 kb on + strandat 295.200 kb on + strandat 295.201 kb on - strandat 295.201 kb on - strandat 295.221 kb on - strandat 295.221 kb on - strandat 295.242 kb on + strandat 295.243 kb on - strandat 295.243 kb on - strandat 295.264 kb on + strandat 295.264 kb on + strandat 295.264 kb on + strandat 295.264 kb on + strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.265 kb on - strandat 295.331 kb on + strandat 295.345 kb on + strandat 295.346 kb on - strandat 295.394 kb on + strand, within EX31_RS05720at 295.394 kb on + strand, within EX31_RS05720at 295.395 kb on - strand, within EX31_RS05720at 295.397 kb on + strand, within EX31_RS05720at 295.398 kb on - strand, within EX31_RS05720at 295.398 kb on - strand, within EX31_RS05720at 295.550 kb on + strand, within EX31_RS05720at 295.550 kb on + strand, within EX31_RS05720at 295.550 kb on + strand, within EX31_RS05720at 295.550 kb on + strand, within EX31_RS05720at 295.550 kb on + strand, within EX31_RS05720at 295.551 kb on - strand, within EX31_RS05720at 295.551 kb on - strand, within EX31_RS05720at 295.551 kb on - strand, within EX31_RS05720at 295.610 kb on + strand, within EX31_RS05720at 295.610 kb on + strand, within EX31_RS05720at 295.611 kb on - strand, within EX31_RS05720at 295.611 kb on - strand, within EX31_RS05720at 295.637 kb on - strand, within EX31_RS05720at 295.643 kb on + strand, within EX31_RS05720at 295.643 kb on + strand, within EX31_RS05720at 295.643 kb on + strand, within EX31_RS05720at 295.644 kb on - strand, within EX31_RS05720at 295.644 kb on - strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.645 kb on + strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.646 kb on - strand, within EX31_RS05720at 295.906 kb on + strand, within EX31_RS05720at 295.906 kb on + strand, within EX31_RS05720at 295.907 kb on - strand, within EX31_RS05720at 295.944 kb on - strand, within EX31_RS05720at 295.944 kb on - strand, within EX31_RS05720at 296.110 kb on + strand, within EX31_RS05720at 296.111 kb on - strand, within EX31_RS05720at 296.111 kb on - strand, within EX31_RS05720at 296.174 kb on - strand, within EX31_RS05720at 296.243 kb on + strandat 296.244 kb on - strandat 296.244 kb on - strandat 296.303 kb on + strandat 296.355 kb on + strandat 296.377 kb on + strandat 296.462 kb on - strand, within EX31_RS05725at 296.496 kb on + strand, within EX31_RS05725at 296.496 kb on + strand, within EX31_RS05725at 296.497 kb on - strand, within EX31_RS05725at 296.497 kb on - strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.528 kb on + strand, within EX31_RS05725at 296.529 kb on - strand, within EX31_RS05725at 296.529 kb on - strand, within EX31_RS05725at 296.583 kb on + strand, within EX31_RS05725at 296.641 kb on + strand, within EX31_RS05725at 296.721 kb on + strand, within EX31_RS05725at 296.722 kb on - strand, within EX31_RS05725at 296.756 kb on + strand, within EX31_RS05725at 296.757 kb on - strand, within EX31_RS05725at 296.757 kb on - strand, within EX31_RS05725at 296.775 kb on + strand, within EX31_RS05725at 296.775 kb on + strand, within EX31_RS05725at 296.776 kb on - strand, within EX31_RS05725at 296.776 kb on - strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.777 kb on + strand, within EX31_RS05725at 296.778 kb on - strand, within EX31_RS05725at 296.778 kb on - strand, within EX31_RS05725at 296.801 kb on + strand, within EX31_RS05725at 296.801 kb on + strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.802 kb on - strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.820 kb on + strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.821 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.836 kb on - strand, within EX31_RS05725at 296.853 kb on + strand, within EX31_RS05725at 296.917 kb on + strandat 296.942 kb on + strandat 296.943 kb on - strandat 297.081 kb on - strandat 297.126 kb on - strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.156 kb on + strandat 297.183 kb on - strand, within EX31_RS05730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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294,281 - EX31_RS05715 0.29 +0.1
294,300 + EX31_RS05715 0.30 -1.7
294,300 + EX31_RS05715 0.30 +0.9
294,300 + EX31_RS05715 0.30 +0.2
294,300 + EX31_RS05715 0.30 -0.8
294,300 + EX31_RS05715 0.30 -0.3
294,300 + EX31_RS05715 0.30 +0.8
294,300 + EX31_RS05715 0.30 -1.4
294,301 - EX31_RS05715 0.31 +0.2
294,301 - EX31_RS05715 0.31 +0.6
294,301 - EX31_RS05715 0.31 -0.6
294,301 - EX31_RS05715 0.31 +0.2
294,301 - EX31_RS05715 0.31 -0.1
294,301 - EX31_RS05715 0.31 -1.9
294,301 - EX31_RS05715 0.31 -1.3
294,301 - EX31_RS05715 0.31 -0.3
294,301 - EX31_RS05715 0.31 +0.1
294,368 + EX31_RS05715 0.36 +0.1
294,369 - EX31_RS05715 0.36 +0.0
294,369 - EX31_RS05715 0.36 -0.3
294,369 - EX31_RS05715 0.36 +1.1
294,417 + EX31_RS05715 0.40 +0.2
294,417 + EX31_RS05715 0.40 -0.0
294,417 + EX31_RS05715 0.40 +0.7
294,417 + EX31_RS05715 0.40 -3.2
294,417 + EX31_RS05715 0.40 -0.3
294,417 + EX31_RS05715 0.40 -0.3
294,418 - EX31_RS05715 0.40 -0.6
294,457 + EX31_RS05715 0.43 -0.1
294,494 - EX31_RS05715 0.47 +0.1
294,504 - EX31_RS05715 0.47 +0.6
294,504 - EX31_RS05715 0.47 +0.9
294,504 - EX31_RS05715 0.47 -0.7
294,734 + EX31_RS05715 0.67 +0.4
294,743 + EX31_RS05715 0.67 +0.3
294,771 - EX31_RS05715 0.70 +0.4
294,807 + EX31_RS05715 0.73 +0.6
294,807 + EX31_RS05715 0.73 -0.1
294,807 + EX31_RS05715 0.73 -0.3
294,807 + EX31_RS05715 0.73 +0.0
294,807 + EX31_RS05715 0.73 +0.1
294,808 - EX31_RS05715 0.73 +0.3
294,808 - EX31_RS05715 0.73 +0.1
294,808 - EX31_RS05715 0.73 +0.3
294,809 + EX31_RS05715 0.73 -0.3
294,809 + EX31_RS05715 0.73 -2.2
294,810 - EX31_RS05715 0.73 -1.4
294,810 - EX31_RS05715 0.73 -0.4
294,810 - EX31_RS05715 0.73 +0.1
294,810 - EX31_RS05715 0.73 +2.2
294,810 - EX31_RS05715 0.73 +0.1
294,837 + EX31_RS05715 0.75 +0.6
294,837 + EX31_RS05715 0.75 -0.0
294,882 - EX31_RS05715 0.79 +0.6
294,998 + EX31_RS05715 0.88 -0.8
295,076 - +1.0
295,149 + -0.7
295,200 + +0.5
295,200 + +0.1
295,201 - +1.2
295,201 - +0.2
295,221 - -0.2
295,221 - -0.6
295,242 + -0.5
295,243 - -0.4
295,243 - -1.2
295,264 + -0.5
295,264 + +0.1
295,264 + +0.3
295,264 + -0.0
295,265 - +1.0
295,265 - +0.8
295,265 - -0.8
295,265 - -0.1
295,265 - -0.3
295,265 - +0.0
295,265 - -0.4
295,265 - -0.7
295,331 + +0.5
295,345 + +1.1
295,346 - +0.5
295,394 + EX31_RS05720 0.13 +0.9
295,394 + EX31_RS05720 0.13 +0.4
295,395 - EX31_RS05720 0.13 -1.3
295,397 + EX31_RS05720 0.13 +0.4
295,398 - EX31_RS05720 0.13 +0.3
295,398 - EX31_RS05720 0.13 +1.4
295,550 + EX31_RS05720 0.28 -1.1
295,550 + EX31_RS05720 0.28 -1.1
295,550 + EX31_RS05720 0.28 -0.1
295,550 + EX31_RS05720 0.28 +0.3
295,550 + EX31_RS05720 0.28 +1.4
295,551 - EX31_RS05720 0.28 -0.7
295,551 - EX31_RS05720 0.28 -0.8
295,551 - EX31_RS05720 0.28 -0.5
295,610 + EX31_RS05720 0.34 -0.4
295,610 + EX31_RS05720 0.34 +0.1
295,611 - EX31_RS05720 0.34 -0.3
295,611 - EX31_RS05720 0.34 +0.5
295,637 - EX31_RS05720 0.37 +0.3
295,643 + EX31_RS05720 0.37 +0.0
295,643 + EX31_RS05720 0.37 +0.1
295,643 + EX31_RS05720 0.37 -0.7
295,644 - EX31_RS05720 0.37 +0.5
295,644 - EX31_RS05720 0.37 -0.6
295,645 + EX31_RS05720 0.37 -1.1
295,645 + EX31_RS05720 0.37 -0.2
295,645 + EX31_RS05720 0.37 -0.5
295,645 + EX31_RS05720 0.37 -0.7
295,645 + EX31_RS05720 0.37 +0.2
295,645 + EX31_RS05720 0.37 -0.2
295,645 + EX31_RS05720 0.37 -0.1
295,645 + EX31_RS05720 0.37 -0.1
295,645 + EX31_RS05720 0.37 +0.1
295,646 - EX31_RS05720 0.38 +0.0
295,646 - EX31_RS05720 0.38 +0.3
295,646 - EX31_RS05720 0.38 -1.2
295,646 - EX31_RS05720 0.38 +0.3
295,646 - EX31_RS05720 0.38 +0.7
295,646 - EX31_RS05720 0.38 -0.2
295,646 - EX31_RS05720 0.38 +0.1
295,646 - EX31_RS05720 0.38 -0.5
295,646 - EX31_RS05720 0.38 +0.6
295,646 - EX31_RS05720 0.38 -0.9
295,646 - EX31_RS05720 0.38 -0.1
295,646 - EX31_RS05720 0.38 -0.4
295,646 - EX31_RS05720 0.38 +0.8
295,646 - EX31_RS05720 0.38 +0.3
295,646 - EX31_RS05720 0.38 -0.6
295,646 - EX31_RS05720 0.38 -0.5
295,646 - EX31_RS05720 0.38 -1.4
295,906 + EX31_RS05720 0.63 -0.2
295,906 + EX31_RS05720 0.63 -1.4
295,907 - EX31_RS05720 0.63 +1.4
295,944 - EX31_RS05720 0.66 +0.9
295,944 - EX31_RS05720 0.66 +0.5
296,110 + EX31_RS05720 0.82 +0.0
296,111 - EX31_RS05720 0.83 -1.7
296,111 - EX31_RS05720 0.83 +2.2
296,174 - EX31_RS05720 0.89 +0.1
296,243 + -1.0
296,244 - -0.8
296,244 - +0.8
296,303 + +0.1
296,355 + +0.4
296,377 + -0.1
296,462 - EX31_RS05725 0.14 -0.1
296,496 + EX31_RS05725 0.20 +0.6
296,496 + EX31_RS05725 0.20 +0.5
296,497 - EX31_RS05725 0.20 +0.7
296,497 - EX31_RS05725 0.20 +0.6
296,528 + EX31_RS05725 0.25 +0.2
296,528 + EX31_RS05725 0.25 +0.7
296,528 + EX31_RS05725 0.25 -0.4
296,528 + EX31_RS05725 0.25 +2.6
296,528 + EX31_RS05725 0.25 -0.4
296,529 - EX31_RS05725 0.25 -1.0
296,529 - EX31_RS05725 0.25 -0.8
296,583 + EX31_RS05725 0.34 +1.4
296,641 + EX31_RS05725 0.44 +0.5
296,721 + EX31_RS05725 0.57 +0.6
296,722 - EX31_RS05725 0.58 -0.7
296,756 + EX31_RS05725 0.63 +1.9
296,757 - EX31_RS05725 0.63 +0.2
296,757 - EX31_RS05725 0.63 -0.3
296,775 + EX31_RS05725 0.66 +0.1
296,775 + EX31_RS05725 0.66 +0.3
296,776 - EX31_RS05725 0.67 +1.2
296,776 - EX31_RS05725 0.67 -0.7
296,777 + EX31_RS05725 0.67 -0.2
296,777 + EX31_RS05725 0.67 +0.4
296,777 + EX31_RS05725 0.67 -1.0
296,778 - EX31_RS05725 0.67 -0.5
296,778 - EX31_RS05725 0.67 -0.1
296,801 + EX31_RS05725 0.71 +0.4
296,801 + EX31_RS05725 0.71 +0.2
296,802 - EX31_RS05725 0.71 +0.8
296,802 - EX31_RS05725 0.71 +0.3
296,802 - EX31_RS05725 0.71 +1.1
296,820 + EX31_RS05725 0.74 +1.2
296,820 + EX31_RS05725 0.74 -0.5
296,820 + EX31_RS05725 0.74 +0.7
296,821 - EX31_RS05725 0.74 +0.6
296,821 - EX31_RS05725 0.74 +0.1
296,821 - EX31_RS05725 0.74 -0.4
296,836 - EX31_RS05725 0.77 +1.9
296,836 - EX31_RS05725 0.77 -1.0
296,836 - EX31_RS05725 0.77 +1.0
296,853 + EX31_RS05725 0.80 -1.3
296,917 + +0.4
296,942 + +0.6
296,943 - +0.8
297,081 - +0.5
297,126 - +0.5
297,156 + -0.1
297,156 + -0.4
297,156 + -1.0
297,156 + +0.3
297,183 - EX31_RS05730 0.14 -0.1

Or see this region's nucleotide sequence