Strain Fitness in Rahnella sp. WP5 around EX31_RS01405

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01400 and EX31_RS01405 are separated by 243 nucleotidesEX31_RS01405 and EX31_RS01410 are separated by 209 nucleotides EX31_RS01400: EX31_RS01400 - dihydrodipicolinate synthase family protein, at 312,063 to 312,953 _RS01400 EX31_RS01405: EX31_RS01405 - hypothetical protein, at 313,197 to 313,604 _RS01405 EX31_RS01410: EX31_RS01410 - hypothetical protein, at 313,814 to 315,163 _RS01410 Position (kb) 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 312.201 kb on + strand, within EX31_RS01400at 312.201 kb on + strand, within EX31_RS01400at 312.201 kb on + strand, within EX31_RS01400at 312.201 kb on + strand, within EX31_RS01400at 312.202 kb on - strand, within EX31_RS01400at 312.202 kb on - strand, within EX31_RS01400at 312.202 kb on - strand, within EX31_RS01400at 312.202 kb on - strand, within EX31_RS01400at 312.310 kb on + strand, within EX31_RS01400at 312.310 kb on + strand, within EX31_RS01400at 312.310 kb on + strand, within EX31_RS01400at 312.310 kb on + strand, within EX31_RS01400at 312.311 kb on - strand, within EX31_RS01400at 312.404 kb on + strand, within EX31_RS01400at 312.405 kb on - strand, within EX31_RS01400at 312.453 kb on + strand, within EX31_RS01400at 312.506 kb on + strand, within EX31_RS01400at 312.920 kb on + strandat 312.941 kb on - strandat 312.981 kb on + strandat 312.981 kb on + strandat 313.003 kb on + strandat 313.115 kb on + strandat 313.116 kb on - strandat 313.196 kb on - strandat 313.204 kb on - strandat 313.256 kb on - strand, within EX31_RS01405at 313.282 kb on - strand, within EX31_RS01405at 313.296 kb on + strand, within EX31_RS01405at 313.296 kb on + strand, within EX31_RS01405at 313.334 kb on + strand, within EX31_RS01405at 313.371 kb on - strand, within EX31_RS01405at 313.371 kb on - strand, within EX31_RS01405at 313.373 kb on + strand, within EX31_RS01405at 313.373 kb on + strand, within EX31_RS01405at 313.374 kb on - strand, within EX31_RS01405at 313.433 kb on - strand, within EX31_RS01405at 313.445 kb on + strand, within EX31_RS01405at 313.545 kb on + strand, within EX31_RS01405at 313.546 kb on - strand, within EX31_RS01405at 313.546 kb on - strand, within EX31_RS01405at 313.571 kb on - strandat 313.710 kb on + strandat 313.733 kb on - strandat 313.798 kb on + strandat 313.798 kb on + strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.799 kb on - strandat 313.917 kb on + strandat 313.970 kb on - strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.198 kb on + strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.199 kb on - strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.290 kb on + strand, within EX31_RS01410at 314.291 kb on - strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.532 kb on + strand, within EX31_RS01410at 314.534 kb on + strand, within EX31_RS01410at 314.535 kb on - strand, within EX31_RS01410

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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312,201 + EX31_RS01400 0.15 +1.0
312,201 + EX31_RS01400 0.15 +1.0
312,201 + EX31_RS01400 0.15 -0.8
312,201 + EX31_RS01400 0.15 +0.6
312,202 - EX31_RS01400 0.16 -2.2
312,202 - EX31_RS01400 0.16 +2.3
312,202 - EX31_RS01400 0.16 +1.2
312,202 - EX31_RS01400 0.16 +0.3
312,310 + EX31_RS01400 0.28 -2.1
312,310 + EX31_RS01400 0.28 +0.1
312,310 + EX31_RS01400 0.28 -1.4
312,310 + EX31_RS01400 0.28 -2.2
312,311 - EX31_RS01400 0.28 -1.6
312,404 + EX31_RS01400 0.38 +0.2
312,405 - EX31_RS01400 0.38 -0.9
312,453 + EX31_RS01400 0.44 +1.0
312,506 + EX31_RS01400 0.50 +0.3
312,920 + +0.0
312,941 - +0.9
312,981 + -0.6
312,981 + -0.2
313,003 + -0.6
313,115 + +0.4
313,116 - -1.7
313,196 - +0.9
313,204 - -0.5
313,256 - EX31_RS01405 0.14 +1.4
313,282 - EX31_RS01405 0.21 +0.8
313,296 + EX31_RS01405 0.24 +2.0
313,296 + EX31_RS01405 0.24 +0.1
313,334 + EX31_RS01405 0.34 +1.0
313,371 - EX31_RS01405 0.43 -1.7
313,371 - EX31_RS01405 0.43 +0.6
313,373 + EX31_RS01405 0.43 -0.1
313,373 + EX31_RS01405 0.43 -0.1
313,374 - EX31_RS01405 0.43 +1.9
313,433 - EX31_RS01405 0.58 -0.6
313,445 + EX31_RS01405 0.61 +0.6
313,545 + EX31_RS01405 0.85 +0.4
313,546 - EX31_RS01405 0.86 +1.0
313,546 - EX31_RS01405 0.86 -1.2
313,571 - +0.2
313,710 + -1.7
313,733 - +0.2
313,798 + +0.6
313,798 + +0.8
313,799 - -1.6
313,799 - +0.5
313,799 - +0.9
313,799 - +0.8
313,799 - +0.5
313,799 - +0.7
313,799 - -0.2
313,799 - +0.2
313,917 + +1.4
313,970 - EX31_RS01410 0.12 +0.2
314,198 + EX31_RS01410 0.28 -1.4
314,198 + EX31_RS01410 0.28 +0.1
314,198 + EX31_RS01410 0.28 -0.5
314,198 + EX31_RS01410 0.28 +0.6
314,199 - EX31_RS01410 0.29 -0.1
314,199 - EX31_RS01410 0.29 +0.2
314,199 - EX31_RS01410 0.29 +0.7
314,199 - EX31_RS01410 0.29 +1.2
314,199 - EX31_RS01410 0.29 +0.9
314,199 - EX31_RS01410 0.29 -0.9
314,290 + EX31_RS01410 0.35 -0.8
314,290 + EX31_RS01410 0.35 +0.8
314,291 - EX31_RS01410 0.35 -0.8
314,532 + EX31_RS01410 0.53 -0.6
314,532 + EX31_RS01410 0.53 +0.9
314,532 + EX31_RS01410 0.53 +1.8
314,532 + EX31_RS01410 0.53 +1.1
314,534 + EX31_RS01410 0.53 +0.0
314,535 - EX31_RS01410 0.53 -1.3

Or see this region's nucleotide sequence