Strain Fitness in Rahnella sp. WP5 around EX31_RS01110

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01105 and EX31_RS01110 are separated by 943 nucleotidesEX31_RS01110 and EX31_RS01115 are separated by 70 nucleotides EX31_RS01105: EX31_RS01105 - tryptophan permease, at 239,248 to 240,492 _RS01105 EX31_RS01110: EX31_RS01110 - hypothetical protein, at 241,436 to 242,170 _RS01110 EX31_RS01115: EX31_RS01115 - ABC-F family ATP-binding cassette domain-containing protein, at 242,241 to 243,974 _RS01115 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 240.455 kb on - strandat 240.492 kb on + strandat 240.530 kb on - strandat 240.584 kb on - strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.615 kb on - strandat 240.615 kb on - strandat 240.615 kb on - strandat 240.669 kb on + strandat 240.669 kb on + strandat 240.744 kb on + strandat 240.864 kb on + strandat 240.865 kb on - strandat 240.901 kb on + strandat 240.940 kb on + strandat 240.940 kb on + strandat 240.940 kb on + strandat 240.967 kb on + strandat 240.972 kb on + strandat 241.004 kb on + strandat 241.093 kb on + strandat 241.125 kb on + strandat 241.177 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.197 kb on + strandat 241.226 kb on + strandat 241.226 kb on + strandat 241.266 kb on + strandat 241.312 kb on + strandat 241.312 kb on + strandat 241.333 kb on + strandat 241.333 kb on + strandat 241.359 kb on + strandat 241.374 kb on + strandat 241.382 kb on + strandat 241.438 kb on - strandat 241.611 kb on + strand, within EX31_RS01110at 241.611 kb on + strand, within EX31_RS01110at 241.611 kb on + strand, within EX31_RS01110at 241.612 kb on - strand, within EX31_RS01110at 241.612 kb on - strand, within EX31_RS01110at 241.657 kb on + strand, within EX31_RS01110at 241.681 kb on - strand, within EX31_RS01110at 241.686 kb on + strand, within EX31_RS01110at 241.686 kb on + strand, within EX31_RS01110at 241.687 kb on - strand, within EX31_RS01110at 241.687 kb on - strand, within EX31_RS01110at 241.688 kb on + strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.993 kb on + strand, within EX31_RS01110at 241.993 kb on + strand, within EX31_RS01110at 242.203 kb on + strandat 242.203 kb on + strandat 242.208 kb on - strandat 242.218 kb on - strandat 242.220 kb on - strandat 242.230 kb on - strandat 242.234 kb on + strandat 242.234 kb on + strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.242 kb on + strandat 242.243 kb on - strandat 242.243 kb on - strandat 242.474 kb on - strand, within EX31_RS01115at 242.474 kb on - strand, within EX31_RS01115at 242.658 kb on + strand, within EX31_RS01115at 242.671 kb on + strand, within EX31_RS01115at 242.672 kb on - strand, within EX31_RS01115at 242.755 kb on + strand, within EX31_RS01115at 242.872 kb on + strand, within EX31_RS01115at 242.876 kb on - strand, within EX31_RS01115at 242.933 kb on + strand, within EX31_RS01115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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240,455 - +1.7
240,492 + +0.5
240,530 - -0.6
240,584 - -0.2
240,614 + +1.0
240,614 + +3.6
240,614 + +0.6
240,614 + +2.0
240,615 - +0.4
240,615 - +0.0
240,615 - +0.0
240,669 + +1.1
240,669 + +0.4
240,744 + +0.8
240,864 + -0.3
240,865 - -1.2
240,901 + +0.0
240,940 + -0.3
240,940 + -0.9
240,940 + -0.1
240,967 + +1.0
240,972 + -0.3
241,004 + +0.0
241,093 + +0.5
241,125 + +1.6
241,177 + -0.1
241,179 + +0.0
241,179 + -0.2
241,179 + -0.5
241,179 + +0.2
241,179 + -0.0
241,197 + +0.3
241,226 + +0.4
241,226 + +0.6
241,266 + +0.1
241,312 + -0.2
241,312 + -0.5
241,333 + -1.6
241,333 + +1.1
241,359 + +0.2
241,374 + +0.6
241,382 + -0.6
241,438 - +1.0
241,611 + EX31_RS01110 0.24 -0.2
241,611 + EX31_RS01110 0.24 +0.3
241,611 + EX31_RS01110 0.24 +0.9
241,612 - EX31_RS01110 0.24 -0.3
241,612 - EX31_RS01110 0.24 +0.0
241,657 + EX31_RS01110 0.30 -0.9
241,681 - EX31_RS01110 0.33 -0.3
241,686 + EX31_RS01110 0.34 -1.4
241,686 + EX31_RS01110 0.34 +1.3
241,687 - EX31_RS01110 0.34 +0.8
241,687 - EX31_RS01110 0.34 -1.3
241,688 + EX31_RS01110 0.34 -1.2
241,689 - EX31_RS01110 0.34 +0.8
241,689 - EX31_RS01110 0.34 +0.1
241,689 - EX31_RS01110 0.34 +0.1
241,969 + EX31_RS01110 0.73 +0.4
241,969 + EX31_RS01110 0.73 +2.8
241,969 + EX31_RS01110 0.73 +0.3
241,970 - EX31_RS01110 0.73 -1.9
241,970 - EX31_RS01110 0.73 +1.2
241,970 - EX31_RS01110 0.73 +0.4
241,970 - EX31_RS01110 0.73 -0.6
241,970 - EX31_RS01110 0.73 -1.8
241,971 + EX31_RS01110 0.73 -0.1
241,971 + EX31_RS01110 0.73 -0.8
241,971 + EX31_RS01110 0.73 +2.2
241,971 + EX31_RS01110 0.73 -0.6
241,971 + EX31_RS01110 0.73 +1.0
241,971 + EX31_RS01110 0.73 -2.0
241,972 - EX31_RS01110 0.73 +0.6
241,972 - EX31_RS01110 0.73 -0.6
241,972 - EX31_RS01110 0.73 +0.3
241,972 - EX31_RS01110 0.73 +0.8
241,993 + EX31_RS01110 0.76 -0.8
241,993 + EX31_RS01110 0.76 -1.0
242,203 + +0.6
242,203 + -1.0
242,208 - -1.0
242,218 - +1.0
242,220 - -0.8
242,230 - -0.3
242,234 + +1.0
242,234 + -0.8
242,235 - -0.7
242,235 - +0.2
242,235 - +0.0
242,235 - +1.0
242,235 - +0.7
242,235 - +0.0
242,235 - -0.4
242,242 + -0.3
242,243 - -0.6
242,243 - +0.2
242,474 - EX31_RS01115 0.13 +0.6
242,474 - EX31_RS01115 0.13 -1.3
242,658 + EX31_RS01115 0.24 +1.0
242,671 + EX31_RS01115 0.25 +1.6
242,672 - EX31_RS01115 0.25 +1.0
242,755 + EX31_RS01115 0.30 +1.3
242,872 + EX31_RS01115 0.36 +0.4
242,876 - EX31_RS01115 0.37 +1.2
242,933 + EX31_RS01115 0.40 -0.9

Or see this region's nucleotide sequence