Strain Fitness in Rahnella sp. WP5 around EX31_RS00200

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00190 and EX31_RS00195 are separated by 212 nucleotidesEX31_RS00195 and EX31_RS00200 are separated by 162 nucleotidesEX31_RS00200 and EX31_RS00205 overlap by 16 nucleotidesEX31_RS00205 and EX31_RS00210 are separated by 22 nucleotides EX31_RS00190: EX31_RS00190 - H-NS histone family protein, at 41,002 to 41,409 _RS00190 EX31_RS00195: EX31_RS00195 - hydrogenase, at 41,622 to 42,155 _RS00195 EX31_RS00200: EX31_RS00200 - hypothetical protein, at 42,318 to 42,782 _RS00200 EX31_RS00205: EX31_RS00205 - DUF1493 family protein, at 42,767 to 43,111 _RS00205 EX31_RS00210: EX31_RS00210 - Hcp family type VI secretion system effector, at 43,134 to 43,616 _RS00210 Position (kb) 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 41.356 kb on - strand, within EX31_RS00190at 41.379 kb on + strandat 41.379 kb on + strandat 41.563 kb on + strandat 41.564 kb on - strandat 41.564 kb on - strandat 41.568 kb on + strandat 41.574 kb on + strandat 41.574 kb on + strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.575 kb on - strandat 41.585 kb on - strandat 41.585 kb on - strandat 41.585 kb on - strandat 41.585 kb on - strandat 41.589 kb on - strandat 41.589 kb on - strandat 41.621 kb on + strandat 41.622 kb on - strandat 41.651 kb on + strandat 41.651 kb on + strandat 41.652 kb on - strandat 41.678 kb on - strand, within EX31_RS00195at 41.678 kb on - strand, within EX31_RS00195at 41.683 kb on + strand, within EX31_RS00195at 41.684 kb on - strand, within EX31_RS00195at 41.691 kb on + strand, within EX31_RS00195at 41.691 kb on + strand, within EX31_RS00195at 41.691 kb on + strand, within EX31_RS00195at 41.692 kb on - strand, within EX31_RS00195at 41.692 kb on - strand, within EX31_RS00195at 41.705 kb on + strand, within EX31_RS00195at 41.705 kb on + strand, within EX31_RS00195at 41.706 kb on - strand, within EX31_RS00195at 41.707 kb on + strand, within EX31_RS00195at 41.707 kb on + strand, within EX31_RS00195at 41.707 kb on + strand, within EX31_RS00195at 41.708 kb on - strand, within EX31_RS00195at 41.708 kb on - strand, within EX31_RS00195at 41.756 kb on + strand, within EX31_RS00195at 41.786 kb on - strand, within EX31_RS00195at 41.798 kb on + strand, within EX31_RS00195at 41.798 kb on + strand, within EX31_RS00195at 41.798 kb on + strand, within EX31_RS00195at 41.799 kb on - strand, within EX31_RS00195at 41.799 kb on - strand, within EX31_RS00195at 41.799 kb on - strand, within EX31_RS00195at 41.823 kb on + strand, within EX31_RS00195at 41.823 kb on + strand, within EX31_RS00195at 41.823 kb on + strand, within EX31_RS00195at 41.824 kb on - strand, within EX31_RS00195at 41.824 kb on - strand, within EX31_RS00195at 41.824 kb on - strand, within EX31_RS00195at 41.868 kb on + strand, within EX31_RS00195at 41.869 kb on - strand, within EX31_RS00195at 41.890 kb on + strand, within EX31_RS00195at 41.890 kb on + strand, within EX31_RS00195at 41.890 kb on + strand, within EX31_RS00195at 41.890 kb on + strand, within EX31_RS00195at 41.890 kb on + strand, within EX31_RS00195at 41.891 kb on - strand, within EX31_RS00195at 41.891 kb on - strand, within EX31_RS00195at 41.891 kb on - strand, within EX31_RS00195at 41.891 kb on - strand, within EX31_RS00195at 41.894 kb on + strand, within EX31_RS00195at 41.894 kb on + strand, within EX31_RS00195at 41.894 kb on + strand, within EX31_RS00195at 41.894 kb on + strand, within EX31_RS00195at 41.894 kb on + strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.895 kb on - strand, within EX31_RS00195at 41.896 kb on + strand, within EX31_RS00195at 41.896 kb on + strand, within EX31_RS00195at 41.896 kb on + strand, within EX31_RS00195at 41.896 kb on + strand, within EX31_RS00195at 41.897 kb on - strand, within EX31_RS00195at 41.897 kb on - strand, within EX31_RS00195at 41.897 kb on - strand, within EX31_RS00195at 41.898 kb on + strand, within EX31_RS00195at 41.898 kb on + strand, within EX31_RS00195at 41.898 kb on + strand, within EX31_RS00195at 41.899 kb on - strand, within EX31_RS00195at 41.973 kb on - strand, within EX31_RS00195at 41.981 kb on + strand, within EX31_RS00195at 41.982 kb on - strand, within EX31_RS00195at 41.982 kb on - strand, within EX31_RS00195at 41.988 kb on - strand, within EX31_RS00195at 41.988 kb on - strand, within EX31_RS00195at 42.064 kb on - strand, within EX31_RS00195at 42.064 kb on - strand, within EX31_RS00195at 42.119 kb on + strandat 42.139 kb on + strandat 42.139 kb on + strandat 42.140 kb on - strandat 42.154 kb on - strandat 42.259 kb on - strandat 42.327 kb on - strandat 42.344 kb on + strandat 42.344 kb on + strandat 42.348 kb on + strandat 42.349 kb on - strandat 42.349 kb on - strandat 42.388 kb on + strand, within EX31_RS00200at 42.437 kb on + strand, within EX31_RS00200at 42.437 kb on + strand, within EX31_RS00200at 42.437 kb on + strand, within EX31_RS00200at 42.438 kb on - strand, within EX31_RS00200at 42.438 kb on - strand, within EX31_RS00200at 42.440 kb on + strand, within EX31_RS00200at 42.440 kb on + strand, within EX31_RS00200at 42.441 kb on - strand, within EX31_RS00200at 42.441 kb on - strand, within EX31_RS00200at 42.458 kb on + strand, within EX31_RS00200at 42.459 kb on - strand, within EX31_RS00200at 42.461 kb on + strand, within EX31_RS00200at 42.461 kb on + strand, within EX31_RS00200at 42.474 kb on + strand, within EX31_RS00200at 42.474 kb on + strand, within EX31_RS00200at 42.475 kb on - strand, within EX31_RS00200at 42.499 kb on + strand, within EX31_RS00200at 42.499 kb on + strand, within EX31_RS00200at 42.612 kb on - strand, within EX31_RS00200at 42.621 kb on - strand, within EX31_RS00200at 42.653 kb on - strand, within EX31_RS00200at 42.653 kb on - strand, within EX31_RS00200at 42.653 kb on - strand, within EX31_RS00200at 42.653 kb on - strand, within EX31_RS00200at 42.656 kb on + strand, within EX31_RS00200at 42.656 kb on + strand, within EX31_RS00200at 42.656 kb on + strand, within EX31_RS00200at 42.657 kb on - strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.660 kb on + strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.661 kb on - strand, within EX31_RS00200at 42.695 kb on - strand, within EX31_RS00200at 42.695 kb on - strand, within EX31_RS00200at 42.697 kb on + strand, within EX31_RS00200at 42.734 kb on + strand, within EX31_RS00200at 42.734 kb on + strand, within EX31_RS00200at 42.761 kb on + strandat 42.761 kb on + strandat 42.762 kb on - strandat 42.774 kb on + strandat 42.780 kb on + strandat 42.780 kb on + strandat 42.820 kb on - strand, within EX31_RS00205at 42.879 kb on + strand, within EX31_RS00205at 42.879 kb on + strand, within EX31_RS00205at 42.909 kb on + strand, within EX31_RS00205at 42.909 kb on + strand, within EX31_RS00205at 42.910 kb on - strand, within EX31_RS00205at 42.911 kb on + strand, within EX31_RS00205at 42.911 kb on + strand, within EX31_RS00205at 42.912 kb on - strand, within EX31_RS00205at 42.974 kb on + strand, within EX31_RS00205at 42.974 kb on + strand, within EX31_RS00205at 42.975 kb on - strand, within EX31_RS00205at 42.975 kb on - strand, within EX31_RS00205at 43.015 kb on + strand, within EX31_RS00205at 43.015 kb on + strand, within EX31_RS00205at 43.028 kb on - strand, within EX31_RS00205at 43.028 kb on - strand, within EX31_RS00205at 43.035 kb on + strand, within EX31_RS00205at 43.035 kb on + strand, within EX31_RS00205at 43.036 kb on - strand, within EX31_RS00205at 43.036 kb on - strand, within EX31_RS00205at 43.056 kb on + strand, within EX31_RS00205at 43.062 kb on + strand, within EX31_RS00205at 43.062 kb on + strand, within EX31_RS00205at 43.104 kb on - strandat 43.132 kb on - strandat 43.173 kb on - strandat 43.173 kb on - strandat 43.188 kb on - strand, within EX31_RS00210at 43.188 kb on - strand, within EX31_RS00210at 43.399 kb on + strand, within EX31_RS00210at 43.399 kb on + strand, within EX31_RS00210at 43.399 kb on + strand, within EX31_RS00210at 43.399 kb on + strand, within EX31_RS00210at 43.399 kb on + strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.400 kb on - strand, within EX31_RS00210at 43.500 kb on + strand, within EX31_RS00210at 43.501 kb on - strand, within EX31_RS00210at 43.529 kb on + strand, within EX31_RS00210at 43.530 kb on - strand, within EX31_RS00210at 43.534 kb on + strand, within EX31_RS00210at 43.535 kb on - strand, within EX31_RS00210at 43.535 kb on - strand, within EX31_RS00210at 43.548 kb on - strand, within EX31_RS00210at 43.597 kb on - strandat 43.600 kb on + strandat 43.600 kb on + strandat 43.634 kb on + strandat 43.647 kb on + strandat 43.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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41,356 - EX31_RS00190 0.87 -2.7
41,379 + +0.0
41,379 + +0.7
41,563 + +0.4
41,564 - -0.5
41,564 - +0.9
41,568 + -0.1
41,574 + -0.1
41,574 + +1.0
41,575 - +0.2
41,575 - +0.5
41,575 - -0.6
41,575 - -1.5
41,575 - -0.0
41,575 - +0.4
41,575 - -0.2
41,575 - +0.0
41,585 - -0.9
41,585 - -0.9
41,585 - +0.8
41,585 - -0.3
41,589 - -1.6
41,589 - +0.0
41,621 + +0.0
41,622 - +0.6
41,651 + +0.5
41,651 + +0.5
41,652 - -0.1
41,678 - EX31_RS00195 0.10 +0.2
41,678 - EX31_RS00195 0.10 +1.3
41,683 + EX31_RS00195 0.11 -1.0
41,684 - EX31_RS00195 0.12 -0.7
41,691 + EX31_RS00195 0.13 +0.7
41,691 + EX31_RS00195 0.13 +0.4
41,691 + EX31_RS00195 0.13 +1.6
41,692 - EX31_RS00195 0.13 +0.6
41,692 - EX31_RS00195 0.13 -0.3
41,705 + EX31_RS00195 0.16 -0.6
41,705 + EX31_RS00195 0.16 +2.1
41,706 - EX31_RS00195 0.16 -2.9
41,707 + EX31_RS00195 0.16 +0.1
41,707 + EX31_RS00195 0.16 -1.1
41,707 + EX31_RS00195 0.16 -0.4
41,708 - EX31_RS00195 0.16 -0.8
41,708 - EX31_RS00195 0.16 -0.8
41,756 + EX31_RS00195 0.25 +0.8
41,786 - EX31_RS00195 0.31 -0.8
41,798 + EX31_RS00195 0.33 +1.9
41,798 + EX31_RS00195 0.33 -0.3
41,798 + EX31_RS00195 0.33 +0.4
41,799 - EX31_RS00195 0.33 +2.8
41,799 - EX31_RS00195 0.33 -0.2
41,799 - EX31_RS00195 0.33 +1.7
41,823 + EX31_RS00195 0.38 -0.9
41,823 + EX31_RS00195 0.38 +1.3
41,823 + EX31_RS00195 0.38 -0.3
41,824 - EX31_RS00195 0.38 +0.1
41,824 - EX31_RS00195 0.38 -1.1
41,824 - EX31_RS00195 0.38 -0.4
41,868 + EX31_RS00195 0.46 +1.1
41,869 - EX31_RS00195 0.46 +1.0
41,890 + EX31_RS00195 0.50 +0.3
41,890 + EX31_RS00195 0.50 -0.6
41,890 + EX31_RS00195 0.50 +1.1
41,890 + EX31_RS00195 0.50 +2.7
41,890 + EX31_RS00195 0.50 +1.6
41,891 - EX31_RS00195 0.50 +1.1
41,891 - EX31_RS00195 0.50 -1.1
41,891 - EX31_RS00195 0.50 +0.5
41,891 - EX31_RS00195 0.50 +0.5
41,894 + EX31_RS00195 0.51 -0.7
41,894 + EX31_RS00195 0.51 +0.8
41,894 + EX31_RS00195 0.51 -1.2
41,894 + EX31_RS00195 0.51 -1.5
41,894 + EX31_RS00195 0.51 -0.7
41,895 - EX31_RS00195 0.51 -0.5
41,895 - EX31_RS00195 0.51 -2.3
41,895 - EX31_RS00195 0.51 -0.7
41,895 - EX31_RS00195 0.51 +0.5
41,895 - EX31_RS00195 0.51 +0.2
41,895 - EX31_RS00195 0.51 +3.1
41,895 - EX31_RS00195 0.51 -0.9
41,896 + EX31_RS00195 0.51 +2.1
41,896 + EX31_RS00195 0.51 +1.3
41,896 + EX31_RS00195 0.51 +0.7
41,896 + EX31_RS00195 0.51 +0.7
41,897 - EX31_RS00195 0.51 +0.2
41,897 - EX31_RS00195 0.51 +1.6
41,897 - EX31_RS00195 0.51 +1.4
41,898 + EX31_RS00195 0.52 +1.1
41,898 + EX31_RS00195 0.52 +1.3
41,898 + EX31_RS00195 0.52 -0.6
41,899 - EX31_RS00195 0.52 -1.8
41,973 - EX31_RS00195 0.66 -0.0
41,981 + EX31_RS00195 0.67 -0.5
41,982 - EX31_RS00195 0.67 +1.1
41,982 - EX31_RS00195 0.67 +0.9
41,988 - EX31_RS00195 0.69 -0.5
41,988 - EX31_RS00195 0.69 +0.2
42,064 - EX31_RS00195 0.83 -0.4
42,064 - EX31_RS00195 0.83 -0.2
42,119 + +1.3
42,139 + -0.4
42,139 + +1.4
42,140 - -0.6
42,154 - -0.9
42,259 - -0.8
42,327 - -0.2
42,344 + -0.2
42,344 + +0.1
42,348 + -0.2
42,349 - +0.8
42,349 - -0.5
42,388 + EX31_RS00200 0.15 +0.5
42,437 + EX31_RS00200 0.26 -0.8
42,437 + EX31_RS00200 0.26 -0.3
42,437 + EX31_RS00200 0.26 -0.3
42,438 - EX31_RS00200 0.26 +1.5
42,438 - EX31_RS00200 0.26 -0.1
42,440 + EX31_RS00200 0.26 +0.2
42,440 + EX31_RS00200 0.26 +0.0
42,441 - EX31_RS00200 0.26 -0.4
42,441 - EX31_RS00200 0.26 -0.5
42,458 + EX31_RS00200 0.30 -0.6
42,459 - EX31_RS00200 0.30 -0.4
42,461 + EX31_RS00200 0.31 +0.3
42,461 + EX31_RS00200 0.31 +0.9
42,474 + EX31_RS00200 0.34 -0.8
42,474 + EX31_RS00200 0.34 -0.1
42,475 - EX31_RS00200 0.34 +0.9
42,499 + EX31_RS00200 0.39 +0.3
42,499 + EX31_RS00200 0.39 -1.4
42,612 - EX31_RS00200 0.63 +0.3
42,621 - EX31_RS00200 0.65 -0.4
42,653 - EX31_RS00200 0.72 +0.1
42,653 - EX31_RS00200 0.72 -3.1
42,653 - EX31_RS00200 0.72 -0.2
42,653 - EX31_RS00200 0.72 +0.1
42,656 + EX31_RS00200 0.73 +0.8
42,656 + EX31_RS00200 0.73 +0.5
42,656 + EX31_RS00200 0.73 +0.4
42,657 - EX31_RS00200 0.73 +0.5
42,660 + EX31_RS00200 0.74 -0.3
42,660 + EX31_RS00200 0.74 +0.0
42,660 + EX31_RS00200 0.74 +1.2
42,660 + EX31_RS00200 0.74 +1.4
42,660 + EX31_RS00200 0.74 +0.8
42,660 + EX31_RS00200 0.74 +0.3
42,660 + EX31_RS00200 0.74 +0.2
42,660 + EX31_RS00200 0.74 -0.4
42,660 + EX31_RS00200 0.74 -2.1
42,660 + EX31_RS00200 0.74 +2.1
42,660 + EX31_RS00200 0.74 +0.5
42,660 + EX31_RS00200 0.74 +0.1
42,660 + EX31_RS00200 0.74 -1.6
42,660 + EX31_RS00200 0.74 -2.1
42,661 - EX31_RS00200 0.74 -0.4
42,661 - EX31_RS00200 0.74 -1.7
42,661 - EX31_RS00200 0.74 -0.0
42,661 - EX31_RS00200 0.74 -0.9
42,661 - EX31_RS00200 0.74 -0.2
42,661 - EX31_RS00200 0.74 +0.9
42,661 - EX31_RS00200 0.74 +0.8
42,661 - EX31_RS00200 0.74 +1.1
42,661 - EX31_RS00200 0.74 -0.2
42,661 - EX31_RS00200 0.74 -0.4
42,661 - EX31_RS00200 0.74 +1.1
42,661 - EX31_RS00200 0.74 -2.1
42,661 - EX31_RS00200 0.74 +1.4
42,661 - EX31_RS00200 0.74 -0.9
42,661 - EX31_RS00200 0.74 +0.9
42,695 - EX31_RS00200 0.81 +0.6
42,695 - EX31_RS00200 0.81 -0.5
42,697 + EX31_RS00200 0.82 +0.3
42,734 + EX31_RS00200 0.89 -0.5
42,734 + EX31_RS00200 0.89 -2.2
42,761 + +0.1
42,761 + +0.7
42,762 - +0.2
42,774 + +0.9
42,780 + -0.2
42,780 + -0.8
42,820 - EX31_RS00205 0.15 -1.6
42,879 + EX31_RS00205 0.32 -1.3
42,879 + EX31_RS00205 0.32 -0.4
42,909 + EX31_RS00205 0.41 -0.4
42,909 + EX31_RS00205 0.41 +1.5
42,910 - EX31_RS00205 0.41 -0.3
42,911 + EX31_RS00205 0.42 -0.7
42,911 + EX31_RS00205 0.42 -0.6
42,912 - EX31_RS00205 0.42 +0.8
42,974 + EX31_RS00205 0.60 +1.4
42,974 + EX31_RS00205 0.60 +2.3
42,975 - EX31_RS00205 0.60 -2.5
42,975 - EX31_RS00205 0.60 +0.6
43,015 + EX31_RS00205 0.72 +0.0
43,015 + EX31_RS00205 0.72 +0.2
43,028 - EX31_RS00205 0.76 +1.4
43,028 - EX31_RS00205 0.76 -1.0
43,035 + EX31_RS00205 0.78 -0.1
43,035 + EX31_RS00205 0.78 -0.4
43,036 - EX31_RS00205 0.78 -0.6
43,036 - EX31_RS00205 0.78 +1.1
43,056 + EX31_RS00205 0.84 -0.3
43,062 + EX31_RS00205 0.86 -1.1
43,062 + EX31_RS00205 0.86 -0.2
43,104 - -1.1
43,132 - +0.8
43,173 - +0.4
43,173 - -0.2
43,188 - EX31_RS00210 0.11 +0.5
43,188 - EX31_RS00210 0.11 -1.0
43,399 + EX31_RS00210 0.55 -1.6
43,399 + EX31_RS00210 0.55 +0.2
43,399 + EX31_RS00210 0.55 -0.4
43,399 + EX31_RS00210 0.55 +1.0
43,399 + EX31_RS00210 0.55 -0.7
43,400 - EX31_RS00210 0.55 +1.5
43,400 - EX31_RS00210 0.55 +0.3
43,400 - EX31_RS00210 0.55 +0.5
43,400 - EX31_RS00210 0.55 -0.1
43,400 - EX31_RS00210 0.55 -0.2
43,400 - EX31_RS00210 0.55 -0.5
43,400 - EX31_RS00210 0.55 -0.9
43,500 + EX31_RS00210 0.76 +0.7
43,501 - EX31_RS00210 0.76 +0.7
43,529 + EX31_RS00210 0.82 +0.8
43,530 - EX31_RS00210 0.82 +0.3
43,534 + EX31_RS00210 0.83 +0.8
43,535 - EX31_RS00210 0.83 -0.0
43,535 - EX31_RS00210 0.83 -0.4
43,548 - EX31_RS00210 0.86 -1.6
43,597 - -0.2
43,600 + +0.1
43,600 + -1.4
43,634 + +0.8
43,647 + +1.1
43,715 - +0.0

Or see this region's nucleotide sequence