Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20220

Experiment: R2A with nitrite 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 3 mM
4,993,454	+				+0.6
4,993,455	-				+0.5
4,993,525	+		CA265_RS20210	0.19	+0.6
4,993,530	-		CA265_RS20210	0.19	-0.8
4,993,552	+		CA265_RS20210	0.23	-1.9
4,993,633	+		CA265_RS20210	0.35	+0.2
4,993,634	-		CA265_RS20210	0.35	+0.3
4,993,634	-		CA265_RS20210	0.35	+0.1
4,993,635	+		CA265_RS20210	0.35	+0.3
4,993,636	-		CA265_RS20210	0.35	+0.8
4,993,636	-		CA265_RS20210	0.35	+0.7
4,993,709	-		CA265_RS20210	0.46	-0.4
4,993,746	-		CA265_RS20210	0.51	-0.0
4,993,838	+		CA265_RS20210	0.65	-0.5
4,993,857	-		CA265_RS20210	0.68	+0.0
4,993,885	-		CA265_RS20210	0.72	-0.5
4,993,891	+		CA265_RS20210	0.73	+1.2
4,993,892	-		CA265_RS20210	0.73	+1.4
4,993,896	-		CA265_RS20210	0.73	+0.1
4,993,904	-		CA265_RS20210	0.75	+0.8
4,994,008	+				-1.1
4,994,112	+		CA265_RS20215	0.32	-0.8
4,994,118	-		CA265_RS20215	0.35	+0.1
4,994,146	+		CA265_RS20215	0.49	-0.2
4,994,166	+		CA265_RS20215	0.59	+0.5
4,994,198	+		CA265_RS20215	0.75	-0.3
4,994,217	+		CA265_RS20215	0.84	-0.1
4,994,218	-		CA265_RS20215	0.84	-0.9
4,994,290	-				-1.4
4,994,296	+				+0.0
4,994,305	+				-0.2
4,994,306	-				+0.1
4,994,306	-				+1.5
4,994,373	-				-0.1
4,994,524	-				-2.5
4,994,524	-				+0.2
4,994,618	-		CA265_RS20220	0.15	+0.3
4,994,638	-		CA265_RS20220	0.17	+0.4
4,994,811	+		CA265_RS20220	0.33	+1.5
4,994,822	-		CA265_RS20220	0.34	+0.5
4,994,829	+		CA265_RS20220	0.35	+0.1
4,994,835	+		CA265_RS20220	0.35	+0.3
4,994,835	+		CA265_RS20220	0.35	+0.4
4,994,835	+		CA265_RS20220	0.35	+0.5
4,994,835	+		CA265_RS20220	0.35	+0.5
4,994,836	-		CA265_RS20220	0.36	+0.9
4,994,887	+		CA265_RS20220	0.40	-0.3
4,994,905	+		CA265_RS20220	0.42	+0.3
4,994,949	+		CA265_RS20220	0.46	-0.7
4,995,028	-		CA265_RS20220	0.53	-0.6
4,995,037	-		CA265_RS20220	0.54	-0.2
4,995,039	+		CA265_RS20220	0.54	+1.0
4,995,062	+				+2.8
4,995,064	+		CA265_RS20220	0.57	-0.3
4,995,169	-		CA265_RS20220	0.66	-0.8
4,995,283	-		CA265_RS20220	0.77	+1.0
4,995,288	+		CA265_RS20220	0.78	-0.8
4,995,305	-		CA265_RS20220	0.79	+0.3
4,995,324	-		CA265_RS20220	0.81	+0.7
4,995,325	+		CA265_RS20220	0.81	+0.4
4,995,325	+		CA265_RS20220	0.81	-0.5
4,995,372	+		CA265_RS20220	0.85	+1.3
4,995,373	-		CA265_RS20220	0.85	+0.9
4,995,377	+		CA265_RS20220	0.86	+0.6
4,995,377	+		CA265_RS20220	0.86	+0.9
4,995,451	+				+1.0
4,995,452	-				+0.4
4,995,469	+				-0.3
4,995,469	+				+0.3
4,995,480	+				+0.4
4,995,491	+				-0.5
4,995,517	-				+2.4
4,995,517	-				+0.2
4,995,527	+				+0.1
4,995,527	+				-1.0
4,995,564	-				+0.1
4,995,568	-				+0.6
4,995,574	-				-0.1
4,995,774	-		CA265_RS20225	0.17	+0.8
4,995,794	+		CA265_RS20225	0.18	-2.4
4,996,017	-		CA265_RS20225	0.36	+0.0
4,996,523	-		CA265_RS20225	0.75	-1.4