Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07940

Experiment: R2A with nitrite 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 3 mM
1,980,139	+		CA265_RS07935	0.23	-0.1
1,980,139	+		CA265_RS07935	0.23	-0.8
1,980,154	-		CA265_RS07935	0.24	-0.1
1,980,252	+				-0.4
1,980,252	+		CA265_RS07935	0.32	-0.6
1,980,253	-		CA265_RS07935	0.32	-2.2
1,980,253	-		CA265_RS07935	0.32	+0.1
1,980,282	-		CA265_RS07935	0.35	-0.8
1,980,369	+		CA265_RS07935	0.42	-0.5
1,980,371	+		CA265_RS07935	0.42	-0.1
1,980,375	-		CA265_RS07935	0.42	+1.2
1,980,375	-		CA265_RS07935	0.42	-0.3
1,980,397	-		CA265_RS07935	0.44	-0.2
1,980,500	-		CA265_RS07935	0.53	+0.4
1,980,503	-		CA265_RS07935	0.53	-0.8
1,980,504	+		CA265_RS07935	0.53	-0.6
1,980,588	+		CA265_RS07935	0.60	-1.2
1,980,680	+		CA265_RS07935	0.67	-0.2
1,980,771	-		CA265_RS07935	0.75	-0.4
1,980,771	-		CA265_RS07935	0.75	+0.2
1,980,784	-		CA265_RS07935	0.76	-0.1
1,980,790	+		CA265_RS07935	0.76	-0.8
1,980,790	+		CA265_RS07935	0.76	-0.6
1,980,791	-		CA265_RS07935	0.76	-0.5
1,980,801	+		CA265_RS07935	0.77	-0.6
1,980,801	+		CA265_RS07935	0.77	-0.1
1,980,805	-		CA265_RS07935	0.78	+0.5
1,980,808	+		CA265_RS07935	0.78	-0.6
1,980,812	+		CA265_RS07935	0.78	+0.1
1,980,832	-		CA265_RS07935	0.80	+0.2
1,980,848	+		CA265_RS07935	0.81	-0.3
1,980,849	-		CA265_RS07935	0.81	+0.9
1,980,849	-		CA265_RS07935	0.81	+0.3
1,981,013	-				+0.2
1,981,013	-				+0.6
1,981,025	+				+0.3
1,981,026	-				-0.0
1,981,191	+				-0.2
1,981,191	+				+1.0
1,981,192	-				-0.0
1,981,195	+				-0.2
1,981,196	-				-0.0
1,981,208	-				-0.3
1,981,228	+				+0.1
1,981,317	+		CA265_RS07940	0.14	+0.1
1,981,357	-		CA265_RS07940	0.17	+0.4
1,981,370	+		CA265_RS07940	0.18	+0.3
1,981,372	+		CA265_RS07940	0.19	-0.6
1,981,376	+		CA265_RS07940	0.19	-0.4
1,981,377	-		CA265_RS07940	0.19	+1.2
1,981,377	-		CA265_RS07940	0.19	+0.8
1,981,424	-		CA265_RS07940	0.23	-0.1
1,981,437	+		CA265_RS07940	0.24	-1.0
1,981,438	-		CA265_RS07940	0.24	-0.1
1,981,438	-		CA265_RS07940	0.24	+0.2
1,981,538	-		CA265_RS07940	0.32	-0.3
1,981,663	-				+0.2
1,981,704	+		CA265_RS07940	0.45	+0.5
1,981,761	+		CA265_RS07940	0.49	+1.0
1,981,814	+		CA265_RS07940	0.53	+0.1
1,981,835	-		CA265_RS07940	0.55	+0.3
1,981,880	-		CA265_RS07940	0.58	-0.1
1,981,915	+		CA265_RS07940	0.61	+0.1
1,981,915	+		CA265_RS07940	0.61	+0.2
1,981,917	+		CA265_RS07940	0.61	+0.2
1,981,917	+		CA265_RS07940	0.61	+0.2
1,981,952	+		CA265_RS07940	0.64	+0.9
1,982,069	+		CA265_RS07940	0.73	-0.5
1,982,070	-		CA265_RS07940	0.73	-0.4
1,982,158	+		CA265_RS07940	0.80	+0.2
1,982,158	+		CA265_RS07940	0.80	-0.8
1,982,158	+		CA265_RS07940	0.80	+0.3
1,982,159	-		CA265_RS07940	0.80	-0.2
1,982,163	+		CA265_RS07940	0.81	-0.0
1,982,213	-		CA265_RS07940	0.84	+0.2
1,982,246	+		CA265_RS07940	0.87	+0.8
1,982,274	-		CA265_RS07940	0.89	+0.2
1,982,335	+				-0.4
1,982,336	-				+0.3
1,982,337	+				+0.1
1,982,378	-				+0.9
1,982,400	+				-0.3
1,982,400	+				+0.1
1,982,556	+		CA265_RS07945	0.25	-0.7
1,982,577	-		CA265_RS07945	0.28	-0.4
1,982,703	-		CA265_RS07945	0.49	-0.5
1,982,742	+		CA265_RS07945	0.56	+0.5
1,982,765	+		CA265_RS07945	0.59	-0.3
1,982,773	+		CA265_RS07945	0.61	-0.2
1,982,815	-		CA265_RS07945	0.68	+0.0
1,982,817	+		CA265_RS07945	0.68	+1.7
1,982,818	-		CA265_RS07945	0.68	+1.2
1,982,890	+		CA265_RS07945	0.80	+1.9
1,982,905	-		CA265_RS07945	0.83	+0.2
1,982,919	-		CA265_RS07945	0.85	-0.3
1,982,936	-		CA265_RS07945	0.88	-0.2
1,982,936	-		CA265_RS07945	0.88	-0.0
1,982,953	-				-0.0
1,983,020	-				+0.2
1,983,020	-				+0.1
1,983,139	-		CA265_RS07950	0.11	+0.6
1,983,269	-		CA265_RS07950	0.23	+0.8
1,983,296	-		CA265_RS07950	0.25	-0.3
1,983,296	-		CA265_RS07950	0.25	-0.1
1,983,324	+		CA265_RS07950	0.28	+0.2
1,983,328	-		CA265_RS07950	0.28	-1.5
1,983,328	-		CA265_RS07950	0.28	+1.2