Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00390

Experiment: R2A with nitrite 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 3 mM
86,523	+				+0.4
86,523	+				+0.1
86,524	-				+0.1
86,524	-				-1.0
86,524	-				-1.6
86,654	+				+0.7
86,654	+				-0.3
86,659	-				-0.3
86,854	+		CA265_RS00385	0.24	-2.3
86,858	+		CA265_RS00385	0.25	-0.5
86,858	+		CA265_RS00385	0.25	+0.2
86,880	-		CA265_RS00385	0.28	+0.4
86,914	-		CA265_RS00385	0.32	+0.1
86,923	-		CA265_RS00385	0.33	+0.2
86,979	-		CA265_RS00385	0.40	-0.4
86,979	-		CA265_RS00385	0.40	+0.7
86,997	+		CA265_RS00385	0.42	+0.8
87,166	+		CA265_RS00385	0.64	-0.5
87,173	+		CA265_RS00385	0.64	+0.8
87,279	+		CA265_RS00385	0.78	-0.4
87,280	-		CA265_RS00385	0.78	-2.2
87,280	-		CA265_RS00385	0.78	+0.8
87,306	-		CA265_RS00385	0.81	+0.9
87,378	+				+0.2
87,379	-				+0.1
87,447	-				+0.2
87,509	+				-0.3
87,557	+		CA265_RS00390	0.14	-0.5
87,613	+		CA265_RS00390	0.25	+0.1
87,614	-		CA265_RS00390	0.25	-0.2
87,618	-		CA265_RS00390	0.26	+0.1
87,626	-		CA265_RS00390	0.27	+0.4
87,629	-		CA265_RS00390	0.28	-0.7
87,652	+		CA265_RS00390	0.33	+1.1
87,652	+		CA265_RS00390	0.33	-0.0
87,655	+		CA265_RS00390	0.33	-0.0
87,655	+		CA265_RS00390	0.33	-0.0
87,656	-		CA265_RS00390	0.33	+0.5
87,676	-		CA265_RS00390	0.37	-3.1
87,687	+		CA265_RS00390	0.39	+0.1
87,729	+		CA265_RS00390	0.48	-0.5
87,730	-		CA265_RS00390	0.48	-0.9
87,748	-		CA265_RS00390	0.51	-0.3
87,756	+		CA265_RS00390	0.53	-0.1
87,769	-		CA265_RS00390	0.56	+0.2
87,809	+		CA265_RS00390	0.64	-0.8
87,852	-		CA265_RS00390	0.72	-0.1
87,852	-		CA265_RS00390	0.72	-2.0
87,892	-		CA265_RS00390	0.80	+0.3
87,916	-		CA265_RS00390	0.85	+0.2
87,940	-		CA265_RS00390	0.89	-1.0
88,003	+				-0.9
88,048	+				-1.0
88,158	-		CA265_RS00395	0.40	-0.8
88,173	-		CA265_RS00395	0.45	+1.1
88,199	+		CA265_RS00395	0.54	+0.6
88,227	+		CA265_RS00395	0.65	+0.2
88,317	+				-0.3
88,317	+				+0.2
88,318	-				+0.7
88,318	-				-0.7
88,341	-				-1.3
88,355	-				-1.0
88,380	-				-1.2
88,387	+				-0.4
88,388	-				-0.3
88,467	-				-0.4
88,469	-				+0.2
88,521	+				+0.2
88,553	+		CA265_RS00400	0.10	+0.8
88,553	+		CA265_RS00400	0.10	-0.5
88,561	+		CA265_RS00400	0.11	+0.5
88,660	+		CA265_RS00400	0.17	+0.2
88,662	+		CA265_RS00400	0.17	+0.4
88,663	-		CA265_RS00400	0.17	-1.0
88,680	-		CA265_RS00400	0.18	-0.3
88,680	-		CA265_RS00400	0.18	+0.0
88,680	-		CA265_RS00400	0.18	+0.0
88,683	+		CA265_RS00400	0.18	+0.1
88,738	+		CA265_RS00400	0.21	-0.8
88,770	+		CA265_RS00400	0.23	+0.2
88,807	+		CA265_RS00400	0.25	-0.2
88,811	-		CA265_RS00400	0.25	-0.0
88,842	-		CA265_RS00400	0.27	-1.2
88,896	+		CA265_RS00400	0.30	+0.3