Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_622 and Ac3H11_623 are separated by 97 nucleotides Ac3H11_623 and Ac3H11_624 are separated by 110 nucleotides Ac3H11_624 and Ac3H11_625 are separated by 176 nucleotides
Ac3H11_622 - Transcriptional regulator, LysR family, at 61,610 to 62,554
_622
Ac3H11_623 - Permeases of the major facilitator superfamily, at 62,652 to 63,863
_623
Ac3H11_624 - Uncharacterized protein conserved in bacteria, at 63,974 to 64,573
_624
Ac3H11_625 - hypothetical protein, at 64,750 to 64,881
_625
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.690 kb on - strand at 61.702 kb on - strand at 61.707 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.717 kb on - strand, within Ac3H11_622 at 61.717 kb on - strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.808 kb on - strand, within Ac3H11_622 at 61.848 kb on + strand, within Ac3H11_622 at 61.936 kb on - strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.366 kb on - strand, within Ac3H11_622 at 62.366 kb on - strand, within Ac3H11_622 at 62.588 kb on + strand at 62.591 kb on + strand at 62.629 kb on - strand at 62.763 kb on + strand at 62.764 kb on - strand at 62.767 kb on - strand at 62.767 kb on - strand at 62.830 kb on + strand, within Ac3H11_623 at 62.830 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.672 kb on + strand, within Ac3H11_623 at 63.672 kb on + strand, within Ac3H11_623 at 63.673 kb on - strand, within Ac3H11_623 at 63.871 kb on - strand at 63.999 kb on + strand at 63.999 kb on + strand at 64.186 kb on - strand, within Ac3H11_624 at 64.649 kb on + strand at 64.689 kb on + strand at 64.689 kb on + strand at 64.689 kb on + strand at 64.690 kb on - strand at 64.690 kb on - strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 61,690 - +0.9 61,702 - -0.3 61,707 + Ac3H11_622 0.10 +0.5 61,716 + Ac3H11_622 0.11 +0.2 61,716 + Ac3H11_622 0.11 +0.1 61,716 + Ac3H11_622 0.11 +0.1 61,716 + Ac3H11_622 0.11 +0.1 61,717 - Ac3H11_622 0.11 +0.5 61,717 - Ac3H11_622 0.11 +0.1 61,807 + Ac3H11_622 0.21 -0.9 61,807 + Ac3H11_622 0.21 -1.3 61,807 + Ac3H11_622 0.21 +0.4 61,808 - Ac3H11_622 0.21 +0.9 61,848 + Ac3H11_622 0.25 -0.2 61,936 - Ac3H11_622 0.34 -1.3 62,181 + Ac3H11_622 0.60 -1.4 62,181 + Ac3H11_622 0.60 +0.8 62,181 + Ac3H11_622 0.60 +0.0 62,182 - Ac3H11_622 0.61 +0.3 62,182 - Ac3H11_622 0.61 -0.0 62,182 - Ac3H11_622 0.61 -1.0 62,182 - Ac3H11_622 0.61 -0.9 62,182 - Ac3H11_622 0.61 +0.1 62,365 + Ac3H11_622 0.80 -1.4 62,365 + Ac3H11_622 0.80 -1.7 62,365 + Ac3H11_622 0.80 +0.1 62,365 + Ac3H11_622 0.80 -0.2 62,365 + Ac3H11_622 0.80 +0.2 62,365 + Ac3H11_622 0.80 +0.7 62,366 - Ac3H11_622 0.80 +0.4 62,366 - Ac3H11_622 0.80 -1.6 62,588 + -1.1 62,591 + +0.5 62,629 - -1.4 62,763 + +0.1 62,764 - -0.6 62,767 - -1.0 62,767 - +0.3 62,830 + Ac3H11_623 0.15 -0.4 62,830 + Ac3H11_623 0.15 -0.3 63,180 + Ac3H11_623 0.44 -2.2 63,180 + Ac3H11_623 0.44 +0.4 63,180 + Ac3H11_623 0.44 +0.2 63,180 + Ac3H11_623 0.44 -0.0 63,180 + Ac3H11_623 0.44 +0.2 63,180 + Ac3H11_623 0.44 -0.2 63,181 - Ac3H11_623 0.44 +0.1 63,181 - Ac3H11_623 0.44 -0.6 63,181 - Ac3H11_623 0.44 -1.2 63,672 + Ac3H11_623 0.84 -0.3 63,672 + Ac3H11_623 0.84 -0.9 63,673 - Ac3H11_623 0.84 +0.0 63,871 - +0.9 63,999 + -1.0 63,999 + +0.2 64,186 - Ac3H11_624 0.35 -1.1 64,649 + -1.4 64,689 + +0.6 64,689 + -1.2 64,689 + -0.0 64,690 - -1.0 64,690 - -0.3 64,719 + -0.5 64,719 + +0.4 64,719 + -0.6 64,719 + -1.7 64,719 + -0.0 64,719 + -1.0 64,719 + +0.7 64,720 - -0.8
Or see this region's nucleotide sequence