Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4465

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4464 and Ac3H11_4693 are separated by 52 nucleotidesAc3H11_4693 and Ac3H11_4465 are separated by 197 nucleotidesAc3H11_4465 and Ac3H11_4466 are separated by 146 nucleotides Ac3H11_4464 - Probable two component response regulator transcription regulator protein, at 47,678 to 48,361 _4464 Ac3H11_4693 - tRNA-Phe-GAA, at 48,414 to 48,486 _4693 Ac3H11_4465 - Putative heat shock protein YegD, at 48,684 to 49,937 _4465 Ac3H11_4466 - rRNA small subunit methyltransferase I, at 50,084 to 51,037 _4466 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.359 kb on + strandat 48.359 kb on + strandat 48.359 kb on + strandat 48.648 kb on - strandat 48.873 kb on + strand, within Ac3H11_4465at 48.873 kb on + strand, within Ac3H11_4465at 48.873 kb on + strand, within Ac3H11_4465at 48.873 kb on + strand, within Ac3H11_4465at 48.873 kb on + strand, within Ac3H11_4465at 48.874 kb on - strand, within Ac3H11_4465at 48.874 kb on - strand, within Ac3H11_4465at 48.874 kb on - strand, within Ac3H11_4465at 48.874 kb on - strand, within Ac3H11_4465at 48.975 kb on + strand, within Ac3H11_4465at 48.975 kb on + strand, within Ac3H11_4465at 48.975 kb on + strand, within Ac3H11_4465at 48.975 kb on + strand, within Ac3H11_4465at 48.976 kb on - strand, within Ac3H11_4465at 48.976 kb on - strand, within Ac3H11_4465at 48.976 kb on - strand, within Ac3H11_4465at 48.976 kb on - strand, within Ac3H11_4465at 48.976 kb on - strand, within Ac3H11_4465at 49.197 kb on + strand, within Ac3H11_4465at 49.198 kb on - strand, within Ac3H11_4465at 49.228 kb on + strand, within Ac3H11_4465at 49.228 kb on + strand, within Ac3H11_4465at 49.229 kb on - strand, within Ac3H11_4465at 49.229 kb on - strand, within Ac3H11_4465at 49.396 kb on + strand, within Ac3H11_4465at 49.397 kb on - strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.488 kb on + strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.489 kb on - strand, within Ac3H11_4465at 49.522 kb on + strand, within Ac3H11_4465at 49.523 kb on - strand, within Ac3H11_4465at 49.523 kb on - strand, within Ac3H11_4465at 49.523 kb on - strand, within Ac3H11_4465at 49.523 kb on - strand, within Ac3H11_4465at 49.523 kb on - strand, within Ac3H11_4465at 49.533 kb on + strand, within Ac3H11_4465at 49.534 kb on - strand, within Ac3H11_4465at 49.534 kb on - strand, within Ac3H11_4465at 49.534 kb on - strand, within Ac3H11_4465at 49.809 kb on + strand, within Ac3H11_4465at 49.809 kb on + strand, within Ac3H11_4465at 49.809 kb on + strand, within Ac3H11_4465at 49.810 kb on - strand, within Ac3H11_4465at 49.810 kb on - strand, within Ac3H11_4465at 50.154 kb on + strandat 50.155 kb on - strandat 50.727 kb on + strand, within Ac3H11_4466at 50.727 kb on + strand, within Ac3H11_4466

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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48,359 + +1.3
48,359 + -1.0
48,359 + -0.2
48,648 - -0.2
48,873 + Ac3H11_4465 0.15 +0.3
48,873 + Ac3H11_4465 0.15 -3.1
48,873 + Ac3H11_4465 0.15 -1.6
48,873 + Ac3H11_4465 0.15 -0.5
48,873 + Ac3H11_4465 0.15 -2.2
48,874 - Ac3H11_4465 0.15 -1.1
48,874 - Ac3H11_4465 0.15 -0.7
48,874 - Ac3H11_4465 0.15 +0.2
48,874 - Ac3H11_4465 0.15 -0.1
48,975 + Ac3H11_4465 0.23 -0.7
48,975 + Ac3H11_4465 0.23 +1.7
48,975 + Ac3H11_4465 0.23 +0.6
48,975 + Ac3H11_4465 0.23 -2.1
48,976 - Ac3H11_4465 0.23 -0.6
48,976 - Ac3H11_4465 0.23 -0.8
48,976 - Ac3H11_4465 0.23 -0.4
48,976 - Ac3H11_4465 0.23 +0.2
48,976 - Ac3H11_4465 0.23 +0.3
49,197 + Ac3H11_4465 0.41 +0.8
49,198 - Ac3H11_4465 0.41 -0.5
49,228 + Ac3H11_4465 0.43 -1.3
49,228 + Ac3H11_4465 0.43 -0.2
49,229 - Ac3H11_4465 0.43 -1.3
49,229 - Ac3H11_4465 0.43 -0.7
49,396 + Ac3H11_4465 0.57 +0.2
49,397 - Ac3H11_4465 0.57 -1.0
49,488 + Ac3H11_4465 0.64 -0.4
49,488 + Ac3H11_4465 0.64 +0.3
49,488 + Ac3H11_4465 0.64 +0.6
49,488 + Ac3H11_4465 0.64 -1.1
49,488 + Ac3H11_4465 0.64 -1.2
49,488 + Ac3H11_4465 0.64 -0.2
49,488 + Ac3H11_4465 0.64 -0.6
49,488 + Ac3H11_4465 0.64 -0.8
49,488 + Ac3H11_4465 0.64 +0.3
49,488 + Ac3H11_4465 0.64 +0.3
49,488 + Ac3H11_4465 0.64 -1.2
49,488 + Ac3H11_4465 0.64 -0.4
49,489 - Ac3H11_4465 0.64 -1.0
49,489 - Ac3H11_4465 0.64 -1.7
49,489 - Ac3H11_4465 0.64 +0.3
49,489 - Ac3H11_4465 0.64 -0.1
49,489 - Ac3H11_4465 0.64 +0.1
49,489 - Ac3H11_4465 0.64 -1.2
49,489 - Ac3H11_4465 0.64 -0.3
49,489 - Ac3H11_4465 0.64 +1.3
49,489 - Ac3H11_4465 0.64 +0.5
49,489 - Ac3H11_4465 0.64 -0.0
49,489 - Ac3H11_4465 0.64 +0.4
49,489 - Ac3H11_4465 0.64 +0.4
49,522 + Ac3H11_4465 0.67 +0.2
49,523 - Ac3H11_4465 0.67 -0.7
49,523 - Ac3H11_4465 0.67 +0.0
49,523 - Ac3H11_4465 0.67 +0.1
49,523 - Ac3H11_4465 0.67 +0.3
49,523 - Ac3H11_4465 0.67 -0.1
49,533 + Ac3H11_4465 0.68 +1.2
49,534 - Ac3H11_4465 0.68 +0.0
49,534 - Ac3H11_4465 0.68 -1.0
49,534 - Ac3H11_4465 0.68 -0.8
49,809 + Ac3H11_4465 0.90 -0.7
49,809 + Ac3H11_4465 0.90 +0.3
49,809 + Ac3H11_4465 0.90 -1.0
49,810 - Ac3H11_4465 0.90 -0.8
49,810 - Ac3H11_4465 0.90 -0.1
50,154 + -2.2
50,155 - -1.4
50,727 + Ac3H11_4466 0.67 -2.4
50,727 + Ac3H11_4466 0.67 -0.5

Or see this region's nucleotide sequence