Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3955 and Ac3H11_3956 are separated by 2 nucleotides Ac3H11_3956 and Ac3H11_3957 are separated by 88 nucleotides
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550
_3956
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.158 kb on + strand, within Ac3H11_3955 at 180.159 kb on - strand, within Ac3H11_3955 at 180.251 kb on + strand, within Ac3H11_3955 at 180.261 kb on - strand, within Ac3H11_3955 at 180.558 kb on - strand, within Ac3H11_3955 at 180.966 kb on - strand at 181.016 kb on - strand at 181.023 kb on + strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.514 kb on - strand at 181.550 kb on + strand at 181.550 kb on + strand at 181.551 kb on - strand at 181.551 kb on - strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.641 kb on - strand at 181.641 kb on - strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.677 kb on - strand at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 182.159 kb on + strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 180,089 + Ac3H11_3955 0.27 -0.1 180,089 + Ac3H11_3955 0.27 +0.1 180,089 + Ac3H11_3955 0.27 +0.2 180,089 + Ac3H11_3955 0.27 +0.1 180,089 + Ac3H11_3955 0.27 +1.0 180,158 + Ac3H11_3955 0.32 +0.2 180,159 - Ac3H11_3955 0.32 +1.0 180,251 + Ac3H11_3955 0.39 +0.2 180,261 - Ac3H11_3955 0.40 -1.6 180,558 - Ac3H11_3955 0.63 +0.0 180,966 - -0.3 181,016 - -0.3 181,023 + +0.2 181,023 + -1.2 181,024 - +0.4 181,150 + Ac3H11_3956 0.23 +0.8 181,150 + Ac3H11_3956 0.23 +0.2 181,150 + Ac3H11_3956 0.23 -0.6 181,150 + Ac3H11_3956 0.23 -0.3 181,151 - Ac3H11_3956 0.23 -2.6 181,151 - Ac3H11_3956 0.23 +0.2 181,151 - Ac3H11_3956 0.23 -0.0 181,151 - Ac3H11_3956 0.23 -1.1 181,514 - +0.3 181,550 + +0.1 181,550 + -1.7 181,551 - -0.1 181,551 - +0.5 181,640 + +0.6 181,640 + -0.5 181,640 + -0.2 181,640 + -0.6 181,640 + -0.9 181,640 + +0.4 181,641 - +0.5 181,641 - +0.3 181,676 + -0.4 181,676 + -0.0 181,676 + -0.1 181,677 - -0.5 181,718 + -2.1 181,718 + +0.5 181,719 - +0.7 181,778 + Ac3H11_3957 0.14 -1.7 181,778 + Ac3H11_3957 0.14 -1.3 181,778 + Ac3H11_3957 0.14 +1.5 181,934 + Ac3H11_3957 0.30 -1.3 181,934 + Ac3H11_3957 0.30 +0.2 182,159 + Ac3H11_3957 0.53 -0.9 182,160 - Ac3H11_3957 0.53 +0.9 182,160 - Ac3H11_3957 0.53 +0.0 182,271 + Ac3H11_3957 0.64 +0.3 182,271 + Ac3H11_3957 0.64 -0.3 182,271 + Ac3H11_3957 0.64 +0.4 182,271 + Ac3H11_3957 0.64 -1.2 182,271 + Ac3H11_3957 0.64 +0.7 182,271 + Ac3H11_3957 0.64 +1.0 182,272 - Ac3H11_3957 0.64 -0.6 182,272 - Ac3H11_3957 0.64 -0.1 182,272 - Ac3H11_3957 0.64 -1.0 182,272 - Ac3H11_3957 0.64 -1.1
Or see this region's nucleotide sequence