Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3948 and Ac3H11_3949 are separated by 15 nucleotides Ac3H11_3949 and Ac3H11_3950 are separated by 133 nucleotides
Ac3H11_3948 - Ferrichrome-iron receptor, at 169,796 to 172,105
_3948
Ac3H11_3949 - Outer membrane stress sensor protease DegS, at 172,121 to 173,644
_3949
Ac3H11_3950 - Catalase (EC 1.11.1.6), at 173,778 to 174,767
_3950
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 171.143 kb on + strand, within Ac3H11_3948 at 171.192 kb on - strand, within Ac3H11_3948 at 171.317 kb on + strand, within Ac3H11_3948 at 171.317 kb on + strand, within Ac3H11_3948 at 171.326 kb on + strand, within Ac3H11_3948 at 171.326 kb on + strand, within Ac3H11_3948 at 171.326 kb on + strand, within Ac3H11_3948 at 171.327 kb on - strand, within Ac3H11_3948 at 171.372 kb on - strand, within Ac3H11_3948 at 171.372 kb on - strand, within Ac3H11_3948 at 171.387 kb on + strand, within Ac3H11_3948 at 171.440 kb on + strand, within Ac3H11_3948 at 171.440 kb on + strand, within Ac3H11_3948 at 171.440 kb on + strand, within Ac3H11_3948 at 171.441 kb on - strand, within Ac3H11_3948 at 171.441 kb on - strand, within Ac3H11_3948 at 171.494 kb on + strand, within Ac3H11_3948 at 171.494 kb on + strand, within Ac3H11_3948 at 171.494 kb on + strand, within Ac3H11_3948 at 171.495 kb on - strand, within Ac3H11_3948 at 171.503 kb on + strand, within Ac3H11_3948 at 171.503 kb on + strand, within Ac3H11_3948 at 171.504 kb on - strand, within Ac3H11_3948 at 171.504 kb on - strand, within Ac3H11_3948 at 171.539 kb on + strand, within Ac3H11_3948 at 171.539 kb on + strand, within Ac3H11_3948 at 171.540 kb on - strand, within Ac3H11_3948 at 171.540 kb on - strand, within Ac3H11_3948 at 171.617 kb on + strand, within Ac3H11_3948 at 171.617 kb on + strand, within Ac3H11_3948 at 171.617 kb on + strand, within Ac3H11_3948 at 171.617 kb on + strand, within Ac3H11_3948 at 171.756 kb on - strand, within Ac3H11_3948 at 171.956 kb on + strand at 171.956 kb on + strand at 171.956 kb on + strand at 171.957 kb on - strand at 171.957 kb on - strand at 171.957 kb on - strand at 171.957 kb on - strand at 171.977 kb on + strand at 172.034 kb on + strand at 172.034 kb on + strand at 172.035 kb on - strand at 172.049 kb on + strand at 172.049 kb on + strand at 172.049 kb on + strand at 172.049 kb on + strand at 172.050 kb on - strand at 172.122 kb on + strand at 172.123 kb on - strand at 172.800 kb on + strand, within Ac3H11_3949 at 172.818 kb on + strand, within Ac3H11_3949 at 172.818 kb on + strand, within Ac3H11_3949 at 172.818 kb on + strand, within Ac3H11_3949 at 172.818 kb on + strand, within Ac3H11_3949 at 172.818 kb on + strand, within Ac3H11_3949 at 172.819 kb on - strand, within Ac3H11_3949 at 172.819 kb on - strand, within Ac3H11_3949 at 172.819 kb on - strand, within Ac3H11_3949 at 172.819 kb on - strand, within Ac3H11_3949 at 173.310 kb on + strand, within Ac3H11_3949 at 173.650 kb on + strand at 173.650 kb on + strand at 173.651 kb on - strand at 173.651 kb on - strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.653 kb on - strand at 173.701 kb on + strand at 173.712 kb on + strand at 173.813 kb on - strand at 173.965 kb on + strand, within Ac3H11_3950 at 173.965 kb on + strand, within Ac3H11_3950 at 173.966 kb on - strand, within Ac3H11_3950 at 174.529 kb on + strand, within Ac3H11_3950
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 171,143 + Ac3H11_3948 0.58 +0.4 171,192 - Ac3H11_3948 0.60 -2.5 171,317 + Ac3H11_3948 0.66 -0.1 171,317 + Ac3H11_3948 0.66 +0.5 171,326 + Ac3H11_3948 0.66 -0.2 171,326 + Ac3H11_3948 0.66 -0.8 171,326 + Ac3H11_3948 0.66 +0.6 171,327 - Ac3H11_3948 0.66 -1.4 171,372 - Ac3H11_3948 0.68 +1.3 171,372 - Ac3H11_3948 0.68 +0.5 171,387 + Ac3H11_3948 0.69 +0.6 171,440 + Ac3H11_3948 0.71 +0.2 171,440 + Ac3H11_3948 0.71 -0.2 171,440 + Ac3H11_3948 0.71 +0.6 171,441 - Ac3H11_3948 0.71 +0.2 171,441 - Ac3H11_3948 0.71 +1.0 171,494 + Ac3H11_3948 0.74 +1.1 171,494 + Ac3H11_3948 0.74 -2.3 171,494 + Ac3H11_3948 0.74 -0.9 171,495 - Ac3H11_3948 0.74 +0.2 171,503 + Ac3H11_3948 0.74 +0.1 171,503 + Ac3H11_3948 0.74 +0.4 171,504 - Ac3H11_3948 0.74 -0.9 171,504 - Ac3H11_3948 0.74 -0.2 171,539 + Ac3H11_3948 0.75 -0.2 171,539 + Ac3H11_3948 0.75 -2.0 171,540 - Ac3H11_3948 0.75 -0.2 171,540 - Ac3H11_3948 0.75 +0.4 171,617 + Ac3H11_3948 0.79 -0.4 171,617 + Ac3H11_3948 0.79 -0.1 171,617 + Ac3H11_3948 0.79 -0.1 171,617 + Ac3H11_3948 0.79 -2.1 171,756 - Ac3H11_3948 0.85 +1.0 171,956 + +1.2 171,956 + -0.8 171,956 + -0.6 171,957 - +0.5 171,957 - -0.9 171,957 - -0.1 171,957 - +0.3 171,977 + +0.6 172,034 + +0.4 172,034 + -0.2 172,035 - +0.1 172,049 + -1.8 172,049 + -1.1 172,049 + -1.0 172,049 + +0.8 172,050 - -0.2 172,122 + -1.7 172,123 - +1.1 172,800 + Ac3H11_3949 0.45 +0.3 172,818 + Ac3H11_3949 0.46 -0.1 172,818 + Ac3H11_3949 0.46 -1.8 172,818 + Ac3H11_3949 0.46 +0.5 172,818 + Ac3H11_3949 0.46 +1.3 172,818 + Ac3H11_3949 0.46 -1.7 172,819 - Ac3H11_3949 0.46 +0.6 172,819 - Ac3H11_3949 0.46 -1.3 172,819 - Ac3H11_3949 0.46 -2.5 172,819 - Ac3H11_3949 0.46 -0.4 173,310 + Ac3H11_3949 0.78 +0.4 173,650 + -1.3 173,650 + -0.7 173,651 - -0.0 173,651 - -0.6 173,652 + +0.6 173,652 + -0.4 173,652 + -0.2 173,652 + -0.3 173,653 - -0.3 173,653 - +0.9 173,653 - +0.2 173,653 - +0.2 173,653 - -0.8 173,653 - -0.5 173,653 - +1.3 173,653 - +0.2 173,701 + +0.4 173,712 + -0.6 173,813 - -0.3 173,965 + Ac3H11_3950 0.19 +0.4 173,965 + Ac3H11_3950 0.19 +1.2 173,966 - Ac3H11_3950 0.19 -0.6 174,529 + Ac3H11_3950 0.76 +0.6
Or see this region's nucleotide sequence