Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3832 and Ac3H11_3833 are separated by 149 nucleotides Ac3H11_3833 and Ac3H11_3834 overlap by 13 nucleotides Ac3H11_3834 and Ac3H11_3835 are separated by 59 nucleotides
Ac3H11_3832 - integral membrane sensor hybrid histidine kinase, at 48,038 to 49,825
_3832
Ac3H11_3833 - probable membrane protein YPO2051, at 49,975 to 50,367
_3833
Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245
_3834
Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664
_3835
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-2
-1
0
1 at 49.226 kb on + strand, within Ac3H11_3832 at 49.226 kb on + strand, within Ac3H11_3832 at 49.226 kb on + strand, within Ac3H11_3832 at 49.227 kb on - strand, within Ac3H11_3832 at 49.909 kb on + strand at 49.909 kb on + strand at 49.909 kb on + strand at 50.251 kb on + strand, within Ac3H11_3833 at 50.251 kb on + strand, within Ac3H11_3833 at 50.252 kb on - strand, within Ac3H11_3833 at 50.482 kb on - strand, within Ac3H11_3834 at 50.598 kb on + strand, within Ac3H11_3834 at 50.791 kb on - strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.272 kb on + strand at 51.273 kb on - strand at 51.326 kb on + strand at 51.327 kb on - strand at 51.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 49,226 + Ac3H11_3832 0.66 -1.8 49,226 + Ac3H11_3832 0.66 -1.4 49,226 + Ac3H11_3832 0.66 +0.3 49,227 - Ac3H11_3832 0.66 -0.2 49,909 + -1.2 49,909 + +0.3 49,909 + +0.0 50,251 + Ac3H11_3833 0.70 -1.7 50,251 + Ac3H11_3833 0.70 -1.2 50,252 - Ac3H11_3833 0.70 -2.0 50,482 - Ac3H11_3834 0.14 -0.4 50,598 + Ac3H11_3834 0.27 +0.1 50,791 - Ac3H11_3834 0.49 +0.3 50,935 + Ac3H11_3834 0.65 -0.2 50,935 + Ac3H11_3834 0.65 -1.0 50,935 + Ac3H11_3834 0.65 +0.5 50,935 + Ac3H11_3834 0.65 -1.1 50,994 + Ac3H11_3834 0.72 +0.2 50,994 + Ac3H11_3834 0.72 +0.1 50,995 - Ac3H11_3834 0.72 +0.3 50,995 - Ac3H11_3834 0.72 -0.3 50,995 - Ac3H11_3834 0.72 -2.3 51,115 - Ac3H11_3834 0.85 +0.1 51,115 - Ac3H11_3834 0.85 -2.2 51,272 + -0.4 51,273 - -0.3 51,326 + +0.8 51,327 - -0.3 51,327 - +0.4
Or see this region's nucleotide sequence