Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3730

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3729 and Ac3H11_3730 are separated by 23 nucleotidesAc3H11_3730 and Ac3H11_3731 are separated by 25 nucleotidesAc3H11_3731 and Ac3H11_3732 are separated by 190 nucleotides Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130 _3729 Ac3H11_3730 - Glutathione-regulated potassium-efflux system ancillary protein KefG, at 90,154 to 90,741 _3730 Ac3H11_3731 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 90,767 to 91,069 _3731 Ac3H11_3732 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 91,260 to 91,934 _3732 Position (kb) 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.169 kb on - strand, within Ac3H11_3729at 89.169 kb on - strand, within Ac3H11_3729at 90.155 kb on + strandat 90.156 kb on - strandat 90.156 kb on - strandat 90.156 kb on - strandat 90.156 kb on - strandat 90.156 kb on - strandat 90.233 kb on + strand, within Ac3H11_3730at 90.233 kb on + strand, within Ac3H11_3730at 90.234 kb on - strand, within Ac3H11_3730at 90.237 kb on - strand, within Ac3H11_3730at 90.237 kb on - strand, within Ac3H11_3730at 90.245 kb on + strand, within Ac3H11_3730at 90.285 kb on - strand, within Ac3H11_3730at 90.285 kb on - strand, within Ac3H11_3730at 90.285 kb on - strand, within Ac3H11_3730at 90.348 kb on - strand, within Ac3H11_3730at 90.348 kb on - strand, within Ac3H11_3730at 90.348 kb on - strand, within Ac3H11_3730at 90.536 kb on + strand, within Ac3H11_3730at 90.537 kb on - strand, within Ac3H11_3730at 90.623 kb on + strand, within Ac3H11_3730at 90.699 kb on - strandat 90.710 kb on - strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.723 kb on - strandat 90.723 kb on - strandat 91.226 kb on + strandat 91.262 kb on - strandat 91.378 kb on + strand, within Ac3H11_3732at 91.387 kb on + strand, within Ac3H11_3732at 91.388 kb on - strand, within Ac3H11_3732at 91.516 kb on + strand, within Ac3H11_3732at 91.516 kb on + strand, within Ac3H11_3732at 91.517 kb on - strand, within Ac3H11_3732at 91.517 kb on - strand, within Ac3H11_3732at 91.591 kb on + strand, within Ac3H11_3732at 91.591 kb on + strand, within Ac3H11_3732at 91.612 kb on + strand, within Ac3H11_3732at 91.612 kb on + strand, within Ac3H11_3732at 91.613 kb on - strand, within Ac3H11_3732at 91.613 kb on - strand, within Ac3H11_3732at 91.624 kb on - strand, within Ac3H11_3732at 91.691 kb on - strand, within Ac3H11_3732at 91.691 kb on - strand, within Ac3H11_3732at 91.705 kb on + strand, within Ac3H11_3732at 91.705 kb on + strand, within Ac3H11_3732at 91.706 kb on - strand, within Ac3H11_3732at 91.706 kb on - strand, within Ac3H11_3732at 91.706 kb on - strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.729 kb on + strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.730 kb on - strand, within Ac3H11_3732at 91.733 kb on - strand, within Ac3H11_3732at 91.733 kb on - strand, within Ac3H11_3732

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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89,169 - Ac3H11_3729 0.28 -1.8
89,169 - Ac3H11_3729 0.28 -1.4
90,155 + -0.1
90,156 - -0.5
90,156 - +0.6
90,156 - -0.5
90,156 - -1.7
90,156 - -0.3
90,233 + Ac3H11_3730 0.13 -1.5
90,233 + Ac3H11_3730 0.13 -0.1
90,234 - Ac3H11_3730 0.14 -1.1
90,237 - Ac3H11_3730 0.14 +0.2
90,237 - Ac3H11_3730 0.14 -1.2
90,245 + Ac3H11_3730 0.15 -0.1
90,285 - Ac3H11_3730 0.22 -0.3
90,285 - Ac3H11_3730 0.22 +0.5
90,285 - Ac3H11_3730 0.22 +0.2
90,348 - Ac3H11_3730 0.33 +0.5
90,348 - Ac3H11_3730 0.33 +0.6
90,348 - Ac3H11_3730 0.33 -0.1
90,536 + Ac3H11_3730 0.65 +0.4
90,537 - Ac3H11_3730 0.65 -0.1
90,623 + Ac3H11_3730 0.80 -0.7
90,699 - +0.5
90,710 - +1.1
90,722 + -0.6
90,722 + +0.6
90,722 + +0.6
90,723 - +0.1
90,723 - -0.7
91,226 + -0.4
91,262 - +0.7
91,378 + Ac3H11_3732 0.17 -0.8
91,387 + Ac3H11_3732 0.19 -3.0
91,388 - Ac3H11_3732 0.19 -0.7
91,516 + Ac3H11_3732 0.38 +0.4
91,516 + Ac3H11_3732 0.38 -0.5
91,517 - Ac3H11_3732 0.38 +0.9
91,517 - Ac3H11_3732 0.38 +0.2
91,591 + Ac3H11_3732 0.49 +0.4
91,591 + Ac3H11_3732 0.49 +0.8
91,612 + Ac3H11_3732 0.52 +0.5
91,612 + Ac3H11_3732 0.52 -0.8
91,613 - Ac3H11_3732 0.52 +0.4
91,613 - Ac3H11_3732 0.52 -0.7
91,624 - Ac3H11_3732 0.54 +0.6
91,691 - Ac3H11_3732 0.64 +0.6
91,691 - Ac3H11_3732 0.64 +0.4
91,705 + Ac3H11_3732 0.66 +0.8
91,705 + Ac3H11_3732 0.66 -0.1
91,706 - Ac3H11_3732 0.66 -0.7
91,706 - Ac3H11_3732 0.66 +0.0
91,706 - Ac3H11_3732 0.66 +0.1
91,729 + Ac3H11_3732 0.69 +0.6
91,729 + Ac3H11_3732 0.69 +0.3
91,729 + Ac3H11_3732 0.69 +0.9
91,729 + Ac3H11_3732 0.69 +0.7
91,729 + Ac3H11_3732 0.69 +0.0
91,729 + Ac3H11_3732 0.69 +0.7
91,729 + Ac3H11_3732 0.69 -0.1
91,729 + Ac3H11_3732 0.69 +1.8
91,729 + Ac3H11_3732 0.69 -0.2
91,729 + Ac3H11_3732 0.69 -0.1
91,729 + Ac3H11_3732 0.69 +0.7
91,730 - Ac3H11_3732 0.70 -0.4
91,730 - Ac3H11_3732 0.70 +0.6
91,730 - Ac3H11_3732 0.70 +0.2
91,730 - Ac3H11_3732 0.70 +1.4
91,730 - Ac3H11_3732 0.70 -0.7
91,730 - Ac3H11_3732 0.70 +0.7
91,733 - Ac3H11_3732 0.70 +0.2
91,733 - Ac3H11_3732 0.70 -1.3

Or see this region's nucleotide sequence