Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3452 and Ac3H11_3648 are separated by 50 nucleotides Ac3H11_3648 and Ac3H11_3453 are separated by 30 nucleotides Ac3H11_3453 and Ac3H11_3454 are separated by 58 nucleotides Ac3H11_3454 and Ac3H11_3455 are separated by 41 nucleotides
Ac3H11_3452 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,811 to 2,785
_3452
Ac3H11_3648 - tRNA-Gln-TTG, at 2,836 to 2,909
_3648
Ac3H11_3453 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 2,940 to 3,779
_3453
Ac3H11_3454 - Outer membrane lipoprotein LolB, at 3,838 to 4,326
_3454
Ac3H11_3455 - FOG: TPR repeat, at 4,368 to 6,128
_3455
Position (kb) 2
3
4 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2.830 kb on - strand at 2.830 kb on - strand at 2.830 kb on - strand at 2.830 kb on - strand at 2.830 kb on - strand at 3.819 kb on + strand at 3.820 kb on - strand at 3.820 kb on - strand at 3.820 kb on - strand at 4.506 kb on + strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.513 kb on - strand at 4.513 kb on - strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.694 kb on - strand, within Ac3H11_3455 at 4.698 kb on + strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,830 - -1.1 2,830 - -0.8 2,830 - -1.9 2,830 - -2.6 2,830 - -0.4 3,819 + +0.2 3,820 - -1.1 3,820 - +0.2 3,820 - -0.7 4,506 + +2.5 4,507 - +1.7 4,507 - +0.6 4,507 - +0.5 4,507 - +0.7 4,513 - -0.3 4,513 - +0.9 4,531 + +1.2 4,531 + +2.2 4,531 + +1.6 4,532 - +0.9 4,532 - +1.5 4,532 - -2.1 4,532 - +1.1 4,532 - +0.5 4,532 - +1.4 4,694 - Ac3H11_3455 0.19 +0.2 4,698 + Ac3H11_3455 0.19 +1.1 4,699 - Ac3H11_3455 0.19 +0.9 4,699 - Ac3H11_3455 0.19 +0.5 4,699 - Ac3H11_3455 0.19 +1.3 4,709 - Ac3H11_3455 0.19 +1.5 4,709 - Ac3H11_3455 0.19 +1.5 4,709 - Ac3H11_3455 0.19 +0.6 4,721 - Ac3H11_3455 0.20 +0.7 4,721 - Ac3H11_3455 0.20 -0.3
Or see this region's nucleotide sequence