Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3295

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3294 and Ac3H11_3295 are separated by 25 nucleotidesAc3H11_3295 and Ac3H11_3296 are separated by 35 nucleotides Ac3H11_3294 - Chromosome initiation inhibitor, at 27,804 to 28,748 _3294 Ac3H11_3295 - Probable protease (EC 3.4.24.3), at 28,774 to 30,213 _3295 Ac3H11_3296 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 30,249 to 31,298 _3296 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.473 kb on - strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.542 kb on + strand, within Ac3H11_3294at 28.543 kb on - strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.630 kb on + strand, within Ac3H11_3294at 28.631 kb on - strand, within Ac3H11_3294at 28.631 kb on - strand, within Ac3H11_3294at 28.851 kb on - strandat 28.959 kb on + strand, within Ac3H11_3295at 29.114 kb on + strand, within Ac3H11_3295at 29.114 kb on + strand, within Ac3H11_3295at 29.115 kb on - strand, within Ac3H11_3295at 29.115 kb on - strand, within Ac3H11_3295at 29.250 kb on - strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.273 kb on + strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.274 kb on - strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.276 kb on + strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.277 kb on - strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.378 kb on + strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.379 kb on - strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.444 kb on + strand, within Ac3H11_3295at 29.445 kb on - strand, within Ac3H11_3295at 29.603 kb on + strand, within Ac3H11_3295at 29.603 kb on + strand, within Ac3H11_3295at 29.604 kb on - strand, within Ac3H11_3295at 29.687 kb on + strand, within Ac3H11_3295at 29.688 kb on - strand, within Ac3H11_3295at 29.688 kb on - strand, within Ac3H11_3295at 29.824 kb on - strand, within Ac3H11_3295at 29.972 kb on + strand, within Ac3H11_3295at 29.972 kb on + strand, within Ac3H11_3295at 29.972 kb on + strand, within Ac3H11_3295at 29.972 kb on + strand, within Ac3H11_3295at 29.973 kb on - strand, within Ac3H11_3295at 29.973 kb on - strand, within Ac3H11_3295at 29.973 kb on - strand, within Ac3H11_3295at 29.973 kb on - strand, within Ac3H11_3295at 29.973 kb on - strand, within Ac3H11_3295at 30.105 kb on - strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.146 kb on + strandat 30.147 kb on - strandat 30.228 kb on + strandat 30.458 kb on - strand, within Ac3H11_3296at 30.592 kb on + strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.593 kb on - strand, within Ac3H11_3296at 30.760 kb on + strand, within Ac3H11_3296at 30.838 kb on + strand, within Ac3H11_3296at 30.838 kb on + strand, within Ac3H11_3296at 30.838 kb on + strand, within Ac3H11_3296at 30.838 kb on + strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.839 kb on - strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.980 kb on + strand, within Ac3H11_3296at 30.981 kb on - strand, within Ac3H11_3296at 30.981 kb on - strand, within Ac3H11_3296at 30.981 kb on - strand, within Ac3H11_3296at 30.981 kb on - strand, within Ac3H11_3296at 31.003 kb on + strand, within Ac3H11_3296at 31.003 kb on + strand, within Ac3H11_3296at 31.003 kb on + strand, within Ac3H11_3296at 31.003 kb on + strand, within Ac3H11_3296at 31.004 kb on - strand, within Ac3H11_3296at 31.004 kb on - strand, within Ac3H11_3296at 31.004 kb on - strand, within Ac3H11_3296

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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28,473 - Ac3H11_3294 0.71 +0.3
28,542 + Ac3H11_3294 0.78 -0.1
28,542 + Ac3H11_3294 0.78 +0.2
28,542 + Ac3H11_3294 0.78 -1.6
28,542 + Ac3H11_3294 0.78 +0.9
28,542 + Ac3H11_3294 0.78 +0.1
28,542 + Ac3H11_3294 0.78 +0.6
28,542 + Ac3H11_3294 0.78 -1.0
28,542 + Ac3H11_3294 0.78 +0.2
28,543 - Ac3H11_3294 0.78 +0.1
28,630 + Ac3H11_3294 0.87 +0.8
28,630 + Ac3H11_3294 0.87 -0.9
28,630 + Ac3H11_3294 0.87 +0.0
28,631 - Ac3H11_3294 0.88 +0.7
28,631 - Ac3H11_3294 0.88 +0.3
28,851 - +0.6
28,959 + Ac3H11_3295 0.13 +0.5
29,114 + Ac3H11_3295 0.24 +0.4
29,114 + Ac3H11_3295 0.24 +0.6
29,115 - Ac3H11_3295 0.24 -1.3
29,115 - Ac3H11_3295 0.24 -0.4
29,250 - Ac3H11_3295 0.33 +1.1
29,273 + Ac3H11_3295 0.35 +0.4
29,273 + Ac3H11_3295 0.35 -0.5
29,273 + Ac3H11_3295 0.35 +0.9
29,273 + Ac3H11_3295 0.35 +0.6
29,273 + Ac3H11_3295 0.35 -0.4
29,273 + Ac3H11_3295 0.35 +0.0
29,274 - Ac3H11_3295 0.35 -0.0
29,274 - Ac3H11_3295 0.35 +0.0
29,274 - Ac3H11_3295 0.35 +1.3
29,274 - Ac3H11_3295 0.35 +0.0
29,274 - Ac3H11_3295 0.35 +1.5
29,274 - Ac3H11_3295 0.35 -0.7
29,274 - Ac3H11_3295 0.35 -0.2
29,276 + Ac3H11_3295 0.35 +0.1
29,276 + Ac3H11_3295 0.35 -2.5
29,276 + Ac3H11_3295 0.35 -1.2
29,276 + Ac3H11_3295 0.35 -0.3
29,277 - Ac3H11_3295 0.35 +1.5
29,277 - Ac3H11_3295 0.35 +0.4
29,277 - Ac3H11_3295 0.35 -2.1
29,277 - Ac3H11_3295 0.35 +0.6
29,277 - Ac3H11_3295 0.35 +0.9
29,378 + Ac3H11_3295 0.42 -0.2
29,378 + Ac3H11_3295 0.42 +0.2
29,378 + Ac3H11_3295 0.42 -1.2
29,378 + Ac3H11_3295 0.42 +0.9
29,378 + Ac3H11_3295 0.42 +1.1
29,378 + Ac3H11_3295 0.42 -0.7
29,378 + Ac3H11_3295 0.42 +0.7
29,378 + Ac3H11_3295 0.42 -1.0
29,378 + Ac3H11_3295 0.42 +0.6
29,378 + Ac3H11_3295 0.42 +0.7
29,378 + Ac3H11_3295 0.42 -1.9
29,379 - Ac3H11_3295 0.42 -1.5
29,379 - Ac3H11_3295 0.42 +0.4
29,379 - Ac3H11_3295 0.42 -0.1
29,379 - Ac3H11_3295 0.42 +0.5
29,379 - Ac3H11_3295 0.42 -0.5
29,379 - Ac3H11_3295 0.42 +0.2
29,379 - Ac3H11_3295 0.42 -0.8
29,379 - Ac3H11_3295 0.42 -1.5
29,379 - Ac3H11_3295 0.42 -1.4
29,379 - Ac3H11_3295 0.42 +1.0
29,379 - Ac3H11_3295 0.42 -0.3
29,379 - Ac3H11_3295 0.42 -0.9
29,379 - Ac3H11_3295 0.42 -3.1
29,379 - Ac3H11_3295 0.42 -1.1
29,379 - Ac3H11_3295 0.42 +0.1
29,444 + Ac3H11_3295 0.47 +1.0
29,444 + Ac3H11_3295 0.47 -0.5
29,444 + Ac3H11_3295 0.47 +0.5
29,444 + Ac3H11_3295 0.47 +0.3
29,444 + Ac3H11_3295 0.47 -2.5
29,445 - Ac3H11_3295 0.47 -0.6
29,603 + Ac3H11_3295 0.58 -0.2
29,603 + Ac3H11_3295 0.58 -1.0
29,604 - Ac3H11_3295 0.58 -0.1
29,687 + Ac3H11_3295 0.63 -0.5
29,688 - Ac3H11_3295 0.63 -1.3
29,688 - Ac3H11_3295 0.63 -1.1
29,824 - Ac3H11_3295 0.73 +0.8
29,972 + Ac3H11_3295 0.83 -0.7
29,972 + Ac3H11_3295 0.83 -2.9
29,972 + Ac3H11_3295 0.83 +0.2
29,972 + Ac3H11_3295 0.83 +0.0
29,973 - Ac3H11_3295 0.83 +0.6
29,973 - Ac3H11_3295 0.83 +0.9
29,973 - Ac3H11_3295 0.83 +0.8
29,973 - Ac3H11_3295 0.83 +0.7
29,973 - Ac3H11_3295 0.83 +0.4
30,105 - +0.3
30,123 - -0.9
30,123 - +0.1
30,123 - -1.0
30,123 - +1.9
30,146 + -0.0
30,147 - -0.6
30,228 + +0.3
30,458 - Ac3H11_3296 0.20 -0.5
30,592 + Ac3H11_3296 0.33 +0.1
30,593 - Ac3H11_3296 0.33 -1.3
30,593 - Ac3H11_3296 0.33 -0.6
30,593 - Ac3H11_3296 0.33 +0.0
30,593 - Ac3H11_3296 0.33 +0.2
30,593 - Ac3H11_3296 0.33 +0.4
30,593 - Ac3H11_3296 0.33 -0.4
30,760 + Ac3H11_3296 0.49 +0.3
30,838 + Ac3H11_3296 0.56 +1.1
30,838 + Ac3H11_3296 0.56 -0.8
30,838 + Ac3H11_3296 0.56 -0.3
30,838 + Ac3H11_3296 0.56 -0.2
30,839 - Ac3H11_3296 0.56 -0.7
30,839 - Ac3H11_3296 0.56 -0.1
30,839 - Ac3H11_3296 0.56 -0.1
30,839 - Ac3H11_3296 0.56 -0.6
30,839 - Ac3H11_3296 0.56 -0.8
30,839 - Ac3H11_3296 0.56 -0.5
30,839 - Ac3H11_3296 0.56 +0.3
30,839 - Ac3H11_3296 0.56 -0.7
30,980 + Ac3H11_3296 0.70 -0.2
30,980 + Ac3H11_3296 0.70 -0.6
30,980 + Ac3H11_3296 0.70 +0.9
30,980 + Ac3H11_3296 0.70 +1.4
30,980 + Ac3H11_3296 0.70 +0.5
30,980 + Ac3H11_3296 0.70 -0.8
30,981 - Ac3H11_3296 0.70 -2.0
30,981 - Ac3H11_3296 0.70 -0.6
30,981 - Ac3H11_3296 0.70 -0.1
30,981 - Ac3H11_3296 0.70 +0.2
31,003 + Ac3H11_3296 0.72 +0.1
31,003 + Ac3H11_3296 0.72 -0.9
31,003 + Ac3H11_3296 0.72 -0.5
31,003 + Ac3H11_3296 0.72 -1.2
31,004 - Ac3H11_3296 0.72 +0.4
31,004 - Ac3H11_3296 0.72 -0.3
31,004 - Ac3H11_3296 0.72 +0.1

Or see this region's nucleotide sequence