Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3218

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3217 and Ac3H11_3218 are separated by 220 nucleotidesAc3H11_3218 and Ac3H11_3219 are separated by 310 nucleotidesAc3H11_3219 and Ac3H11_3220 are separated by 54 nucleotides Ac3H11_3217 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 125,485 to 126,645 _3217 Ac3H11_3218 - Response regulator NasT, at 126,866 to 127,504 _3218 Ac3H11_3219 - hypothetical protein, at 127,815 to 127,949 _3219 Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248 _3220 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.122 kb on + strand, within Ac3H11_3217at 126.122 kb on + strand, within Ac3H11_3217at 126.275 kb on + strand, within Ac3H11_3217at 126.275 kb on + strand, within Ac3H11_3217at 126.275 kb on + strand, within Ac3H11_3217at 126.275 kb on + strand, within Ac3H11_3217at 126.275 kb on + strand, within Ac3H11_3217at 126.276 kb on - strand, within Ac3H11_3217at 126.430 kb on + strand, within Ac3H11_3217at 126.431 kb on - strand, within Ac3H11_3217at 126.431 kb on - strand, within Ac3H11_3217at 126.437 kb on + strand, within Ac3H11_3217at 126.437 kb on + strand, within Ac3H11_3217at 126.438 kb on - strand, within Ac3H11_3217at 126.659 kb on + strandat 126.660 kb on - strandat 126.660 kb on - strandat 126.660 kb on - strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.685 kb on + strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.686 kb on - strandat 126.687 kb on + strandat 126.687 kb on + strandat 126.688 kb on - strandat 126.688 kb on - strandat 126.688 kb on - strandat 126.688 kb on - strandat 126.688 kb on - strandat 126.718 kb on - strandat 126.739 kb on + strandat 126.739 kb on + strandat 126.739 kb on + strandat 126.740 kb on - strandat 126.742 kb on + strandat 126.743 kb on - strandat 126.743 kb on - strandat 126.877 kb on + strandat 126.878 kb on - strandat 126.878 kb on - strandat 127.223 kb on + strand, within Ac3H11_3218at 127.223 kb on + strand, within Ac3H11_3218at 127.224 kb on - strand, within Ac3H11_3218at 127.502 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.983 kb on - strandat 127.983 kb on - strandat 128.214 kb on + strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.308 kb on - strand, within Ac3H11_3220at 128.319 kb on + strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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126,122 + Ac3H11_3217 0.55 +0.5
126,122 + Ac3H11_3217 0.55 +2.1
126,275 + Ac3H11_3217 0.68 +0.7
126,275 + Ac3H11_3217 0.68 -1.4
126,275 + Ac3H11_3217 0.68 -1.4
126,275 + Ac3H11_3217 0.68 +0.6
126,275 + Ac3H11_3217 0.68 +1.1
126,276 - Ac3H11_3217 0.68 +0.1
126,430 + Ac3H11_3217 0.81 +1.4
126,431 - Ac3H11_3217 0.81 -1.2
126,431 - Ac3H11_3217 0.81 +1.0
126,437 + Ac3H11_3217 0.82 -0.9
126,437 + Ac3H11_3217 0.82 +0.3
126,438 - Ac3H11_3217 0.82 -0.8
126,659 + -0.2
126,660 - -0.9
126,660 - +0.6
126,660 - +0.5
126,685 + -0.0
126,685 + -1.0
126,685 + -0.5
126,685 + +1.3
126,685 + -0.7
126,685 + +0.7
126,685 + +1.3
126,685 + +0.6
126,685 + -1.0
126,685 + +1.3
126,685 + -0.4
126,685 + -0.9
126,685 + -0.5
126,685 + +0.4
126,685 + +2.1
126,685 + -1.3
126,686 - -0.7
126,686 - -0.1
126,686 - +0.3
126,686 - -0.4
126,686 - -1.5
126,686 - -0.5
126,686 - -0.3
126,686 - -0.9
126,686 - +0.2
126,686 - -0.6
126,686 - +0.3
126,686 - +1.0
126,686 - -2.3
126,686 - +0.6
126,686 - -1.5
126,686 - +0.5
126,686 - -0.7
126,686 - -0.3
126,687 + -3.4
126,687 + -0.7
126,688 - -0.8
126,688 - -0.4
126,688 - +0.6
126,688 - -0.7
126,688 - -0.1
126,718 - -1.5
126,739 + -0.7
126,739 + -1.0
126,739 + -0.1
126,740 - -0.8
126,742 + +0.6
126,743 - -2.3
126,743 - -0.6
126,877 + +0.2
126,878 - -0.2
126,878 - +0.2
127,223 + Ac3H11_3218 0.56 +0.6
127,223 + Ac3H11_3218 0.56 -0.3
127,224 - Ac3H11_3218 0.56 +0.7
127,502 + -1.3
127,982 + +1.5
127,982 + -0.4
127,983 - -0.0
127,983 - +0.9
128,214 + Ac3H11_3220 0.17 -1.1
128,215 - Ac3H11_3220 0.17 -1.9
128,215 - Ac3H11_3220 0.17 -0.3
128,308 - Ac3H11_3220 0.24 +0.3
128,319 + Ac3H11_3220 0.25 -0.1
128,320 - Ac3H11_3220 0.25 +0.7
128,320 - Ac3H11_3220 0.25 -0.2
128,481 + Ac3H11_3220 0.38 -0.2
128,481 + Ac3H11_3220 0.38 -0.5
128,481 + Ac3H11_3220 0.38 -1.3
128,481 + Ac3H11_3220 0.38 -0.1
128,481 + Ac3H11_3220 0.38 -0.0
128,482 - Ac3H11_3220 0.38 +0.4
128,482 - Ac3H11_3220 0.38 +0.8
128,482 - Ac3H11_3220 0.38 +0.5
128,482 - Ac3H11_3220 0.38 -2.0
128,482 - Ac3H11_3220 0.38 +0.0

Or see this region's nucleotide sequence