Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1260

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1259 and Ac3H11_1260 are separated by 24 nucleotidesAc3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides Ac3H11_1259 - N-formylglutamate deformylase (EC 3.5.1.68), at 77,683 to 78,615 _1259 Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749 _1260 Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308 _1261 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.974 kb on + strand, within Ac3H11_1259at 77.974 kb on + strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.187 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.404 kb on - strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.429 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.668 kb on + strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.831 kb on - strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.208 kb on + strand, within Ac3H11_1260at 79.209 kb on - strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260at 79.831 kb on - strandat 80.142 kb on + strand, within Ac3H11_1261at 80.142 kb on + strand, within Ac3H11_1261at 80.142 kb on + strand, within Ac3H11_1261at 80.143 kb on - strand, within Ac3H11_1261

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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77,682 + -0.1
77,682 + +0.8
77,682 + -0.3
77,682 + -1.3
77,682 + +0.5
77,683 - +0.6
77,683 - +0.8
77,683 - +0.4
77,974 + Ac3H11_1259 0.31 -0.1
77,974 + Ac3H11_1259 0.31 -0.9
77,975 - Ac3H11_1259 0.31 +0.0
77,975 - Ac3H11_1259 0.31 +0.1
77,975 - Ac3H11_1259 0.31 +0.5
78,127 + Ac3H11_1259 0.48 -2.7
78,127 + Ac3H11_1259 0.48 +1.1
78,127 + Ac3H11_1259 0.48 +0.1
78,127 + Ac3H11_1259 0.48 +0.2
78,127 + Ac3H11_1259 0.48 +0.1
78,127 + Ac3H11_1259 0.48 +0.3
78,127 + Ac3H11_1259 0.48 +0.2
78,127 + Ac3H11_1259 0.48 -0.7
78,128 - Ac3H11_1259 0.48 -0.2
78,128 - Ac3H11_1259 0.48 -1.9
78,128 - Ac3H11_1259 0.48 -0.4
78,128 - Ac3H11_1259 0.48 -1.5
78,128 - Ac3H11_1259 0.48 +0.1
78,128 - Ac3H11_1259 0.48 +0.9
78,128 - Ac3H11_1259 0.48 +0.0
78,187 + Ac3H11_1259 0.54 +0.2
78,403 + Ac3H11_1259 0.77 +0.3
78,403 + Ac3H11_1259 0.77 -0.4
78,404 - Ac3H11_1259 0.77 -0.6
78,415 + Ac3H11_1259 0.78 +0.8
78,415 + Ac3H11_1259 0.78 -0.1
78,415 + Ac3H11_1259 0.78 -1.1
78,415 + Ac3H11_1259 0.78 +0.1
78,416 - Ac3H11_1259 0.79 -1.6
78,416 - Ac3H11_1259 0.79 -0.3
78,427 + Ac3H11_1259 0.80 +1.3
78,427 + Ac3H11_1259 0.80 -0.3
78,427 + Ac3H11_1259 0.80 -0.1
78,428 - Ac3H11_1259 0.80 +0.5
78,428 - Ac3H11_1259 0.80 +0.5
78,428 - Ac3H11_1259 0.80 -1.0
78,428 - Ac3H11_1259 0.80 -0.7
78,428 - Ac3H11_1259 0.80 -0.6
78,428 - Ac3H11_1259 0.80 -0.1
78,428 - Ac3H11_1259 0.80 +0.3
78,429 + Ac3H11_1259 0.80 +0.2
78,511 + Ac3H11_1259 0.89 +0.8
78,511 + Ac3H11_1259 0.89 -0.3
78,511 + Ac3H11_1259 0.89 -0.1
78,511 + Ac3H11_1259 0.89 -0.2
78,511 + Ac3H11_1259 0.89 +0.8
78,511 + Ac3H11_1259 0.89 +0.1
78,511 + Ac3H11_1259 0.89 +0.3
78,511 + Ac3H11_1259 0.89 +0.5
78,512 - Ac3H11_1259 0.89 -0.8
78,512 - Ac3H11_1259 0.89 +0.3
78,512 - Ac3H11_1259 0.89 -1.1
78,512 - Ac3H11_1259 0.89 -0.1
78,512 - Ac3H11_1259 0.89 -0.3
78,668 + +0.0
78,669 - +1.1
78,669 - +1.8
78,669 - +0.6
78,669 - -0.7
78,669 - -0.4
78,669 - -0.4
78,669 - -0.7
78,831 - Ac3H11_1260 0.17 -0.2
78,875 + Ac3H11_1260 0.21 -1.2
78,875 + Ac3H11_1260 0.21 -0.1
78,875 + Ac3H11_1260 0.21 -0.9
78,875 + Ac3H11_1260 0.21 -1.8
78,875 + Ac3H11_1260 0.21 -1.6
78,875 + Ac3H11_1260 0.21 -0.8
78,875 + Ac3H11_1260 0.21 +0.2
78,876 - Ac3H11_1260 0.21 +0.5
78,876 - Ac3H11_1260 0.21 -0.5
78,876 - Ac3H11_1260 0.21 -1.0
78,876 - Ac3H11_1260 0.21 -0.9
78,876 - Ac3H11_1260 0.21 -0.5
78,876 - Ac3H11_1260 0.21 +0.6
78,876 - Ac3H11_1260 0.21 +0.3
78,876 - Ac3H11_1260 0.21 -0.3
78,876 - Ac3H11_1260 0.21 +0.1
78,876 - Ac3H11_1260 0.21 -1.8
79,193 + Ac3H11_1260 0.50 -0.1
79,193 + Ac3H11_1260 0.50 +0.1
79,194 - Ac3H11_1260 0.50 +0.1
79,194 - Ac3H11_1260 0.50 -0.8
79,194 - Ac3H11_1260 0.50 -0.6
79,194 - Ac3H11_1260 0.50 +0.4
79,194 - Ac3H11_1260 0.50 +0.3
79,208 + Ac3H11_1260 0.51 +0.0
79,209 - Ac3H11_1260 0.51 +0.7
79,418 + Ac3H11_1260 0.70 -1.2
79,418 + Ac3H11_1260 0.70 +0.2
79,831 - -0.7
80,142 + Ac3H11_1261 0.14 +0.4
80,142 + Ac3H11_1261 0.14 -1.3
80,142 + Ac3H11_1261 0.14 +0.4
80,143 - Ac3H11_1261 0.14 -1.0

Or see this region's nucleotide sequence