Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1118

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1117 and Ac3H11_1118 are separated by 85 nucleotidesAc3H11_1118 and Ac3H11_1119 are separated by 138 nucleotidesAc3H11_1119 and Ac3H11_1120 are separated by 45 nucleotides Ac3H11_1117 - Guanine deaminase (EC 3.5.4.3), at 59,818 to 61,092 _1117 Ac3H11_1118 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 61,178 to 61,750 _1118 Ac3H11_1119 - hypothetical protein, at 61,889 to 62,170 _1119 Ac3H11_1120 - Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF), at 62,216 to 63,916 _1120 Position (kb) 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1at 60.370 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.580 kb on + strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 61.177 kb on + strandat 61.177 kb on + strandat 61.177 kb on + strandat 61.177 kb on + strandat 61.790 kb on + strandat 61.790 kb on + strandat 61.791 kb on - strandat 61.791 kb on - strandat 61.838 kb on + strandat 61.839 kb on - strandat 61.918 kb on + strand, within Ac3H11_1119at 61.918 kb on + strand, within Ac3H11_1119at 61.919 kb on - strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.973 kb on + strand, within Ac3H11_1119at 61.973 kb on + strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 62.067 kb on - strand, within Ac3H11_1119at 62.144 kb on + strandat 62.145 kb on - strandat 62.145 kb on - strandat 62.145 kb on - strandat 62.263 kb on - strandat 62.550 kb on + strand, within Ac3H11_1120at 62.551 kb on - strand, within Ac3H11_1120at 62.551 kb on - strand, within Ac3H11_1120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
60,370 + Ac3H11_1117 0.43 -3.0
60,532 + Ac3H11_1117 0.56 +0.0
60,532 + Ac3H11_1117 0.56 -0.2
60,532 + Ac3H11_1117 0.56 -0.3
60,532 + Ac3H11_1117 0.56 -0.7
60,532 + Ac3H11_1117 0.56 +0.3
60,533 - Ac3H11_1117 0.56 -0.4
60,533 - Ac3H11_1117 0.56 +0.7
60,533 - Ac3H11_1117 0.56 +1.4
60,533 - Ac3H11_1117 0.56 -0.2
60,533 - Ac3H11_1117 0.56 -0.3
60,544 + Ac3H11_1117 0.57 +0.1
60,544 + Ac3H11_1117 0.57 +1.7
60,545 - Ac3H11_1117 0.57 -0.5
60,545 - Ac3H11_1117 0.57 +0.6
60,580 + Ac3H11_1117 0.60 -0.1
60,581 - Ac3H11_1117 0.60 -1.1
60,581 - Ac3H11_1117 0.60 +0.6
60,581 - Ac3H11_1117 0.60 +1.0
60,694 + Ac3H11_1117 0.69 +0.8
60,694 + Ac3H11_1117 0.69 +0.5
60,694 + Ac3H11_1117 0.69 -1.2
60,695 - Ac3H11_1117 0.69 -1.2
60,695 - Ac3H11_1117 0.69 +0.3
60,695 - Ac3H11_1117 0.69 +0.8
60,695 - Ac3H11_1117 0.69 -0.1
60,790 + Ac3H11_1117 0.76 -1.4
60,790 + Ac3H11_1117 0.76 -0.4
60,790 + Ac3H11_1117 0.76 +0.4
60,790 + Ac3H11_1117 0.76 -2.7
60,793 + Ac3H11_1117 0.76 -0.2
60,793 + Ac3H11_1117 0.76 +0.2
60,793 + Ac3H11_1117 0.76 +0.7
60,793 + Ac3H11_1117 0.76 +0.0
60,793 + Ac3H11_1117 0.76 +0.1
60,793 + Ac3H11_1117 0.76 -0.2
60,793 + Ac3H11_1117 0.76 -0.4
60,793 + Ac3H11_1117 0.76 +1.3
60,794 - Ac3H11_1117 0.77 +0.5
60,794 - Ac3H11_1117 0.77 +0.9
60,794 - Ac3H11_1117 0.77 +0.2
60,794 - Ac3H11_1117 0.77 +0.8
60,794 - Ac3H11_1117 0.77 -0.3
60,794 - Ac3H11_1117 0.77 -1.2
60,794 - Ac3H11_1117 0.77 +0.5
60,794 - Ac3H11_1117 0.77 -0.4
60,794 - Ac3H11_1117 0.77 +0.0
60,794 - Ac3H11_1117 0.77 +0.1
60,794 - Ac3H11_1117 0.77 +0.1
60,794 - Ac3H11_1117 0.77 +0.2
60,848 + Ac3H11_1117 0.81 +1.5
60,848 + Ac3H11_1117 0.81 +0.9
60,848 + Ac3H11_1117 0.81 -0.5
60,848 + Ac3H11_1117 0.81 -0.2
60,849 - Ac3H11_1117 0.81 +0.0
60,849 - Ac3H11_1117 0.81 -0.7
60,849 - Ac3H11_1117 0.81 +0.6
61,177 + -1.9
61,177 + -1.2
61,177 + -0.7
61,177 + -0.5
61,790 + -0.9
61,790 + +0.3
61,791 - +0.1
61,791 - +0.4
61,838 + -1.1
61,839 - -0.5
61,918 + Ac3H11_1119 0.10 -1.2
61,918 + Ac3H11_1119 0.10 -2.2
61,919 - Ac3H11_1119 0.11 -1.1
61,921 + Ac3H11_1119 0.11 -0.5
61,921 + Ac3H11_1119 0.11 +0.8
61,921 + Ac3H11_1119 0.11 +1.1
61,922 - Ac3H11_1119 0.12 +0.5
61,922 - Ac3H11_1119 0.12 -0.2
61,922 - Ac3H11_1119 0.12 -0.1
61,973 + Ac3H11_1119 0.30 +1.1
61,973 + Ac3H11_1119 0.30 -0.2
61,974 - Ac3H11_1119 0.30 +0.4
61,974 - Ac3H11_1119 0.30 +0.4
61,974 - Ac3H11_1119 0.30 +1.2
61,974 - Ac3H11_1119 0.30 -0.3
62,067 - Ac3H11_1119 0.63 -0.4
62,144 + +0.4
62,145 - -0.5
62,145 - -0.2
62,145 - +1.2
62,263 - +0.3
62,550 + Ac3H11_1120 0.20 -0.4
62,551 - Ac3H11_1120 0.20 -0.9
62,551 - Ac3H11_1120 0.20 -0.2

Or see this region's nucleotide sequence