Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_102

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_101 and Ac3H11_102 are separated by 34 nucleotidesAc3H11_102 and Ac3H11_103 are separated by 1 nucleotides Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994 _101 Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910 _102 Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961 _103 Position (kb) 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 105.036 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.326 kb on + strand, within Ac3H11_101at 105.327 kb on - strand, within Ac3H11_101at 105.327 kb on - strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.444 kb on - strand, within Ac3H11_101at 105.491 kb on + strand, within Ac3H11_101at 105.492 kb on - strand, within Ac3H11_101at 105.492 kb on - strand, within Ac3H11_101at 105.653 kb on + strand, within Ac3H11_101at 105.749 kb on + strand, within Ac3H11_101at 105.749 kb on + strand, within Ac3H11_101at 105.750 kb on - strand, within Ac3H11_101at 105.750 kb on - strand, within Ac3H11_101at 105.767 kb on + strand, within Ac3H11_101at 106.029 kb on - strandat 106.048 kb on + strandat 106.049 kb on - strandat 106.167 kb on + strand, within Ac3H11_102at 106.167 kb on + strand, within Ac3H11_102at 106.174 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.458 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.606 kb on - strand, within Ac3H11_102at 106.671 kb on + strand, within Ac3H11_102at 106.672 kb on - strand, within Ac3H11_102at 106.809 kb on + strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102at 107.077 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.197 kb on + strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.198 kb on - strand, within Ac3H11_103at 107.323 kb on + strand, within Ac3H11_103at 107.324 kb on - strand, within Ac3H11_103at 107.374 kb on + strand, within Ac3H11_103at 107.375 kb on - strand, within Ac3H11_103at 107.518 kb on + strand, within Ac3H11_103at 107.608 kb on + strand, within Ac3H11_103at 107.609 kb on - strand, within Ac3H11_103at 107.763 kb on + strand, within Ac3H11_103at 107.764 kb on - strand, within Ac3H11_103at 107.776 kb on + strand, within Ac3H11_103at 107.776 kb on + strand, within Ac3H11_103

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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105,036 - Ac3H11_101 0.18 +0.8
105,266 - Ac3H11_101 0.38 +0.1
105,266 - Ac3H11_101 0.38 +1.2
105,266 - Ac3H11_101 0.38 -1.4
105,326 + Ac3H11_101 0.43 +0.3
105,327 - Ac3H11_101 0.43 -0.1
105,327 - Ac3H11_101 0.43 +0.2
105,443 + Ac3H11_101 0.53 -0.1
105,443 + Ac3H11_101 0.53 -0.7
105,443 + Ac3H11_101 0.53 +1.2
105,444 - Ac3H11_101 0.53 +0.3
105,491 + Ac3H11_101 0.57 -1.6
105,492 - Ac3H11_101 0.57 -2.5
105,492 - Ac3H11_101 0.57 +0.5
105,653 + Ac3H11_101 0.71 -0.7
105,749 + Ac3H11_101 0.79 -0.2
105,749 + Ac3H11_101 0.79 +0.2
105,750 - Ac3H11_101 0.79 +0.2
105,750 - Ac3H11_101 0.79 +0.9
105,767 + Ac3H11_101 0.81 +1.0
106,029 - -0.1
106,048 + -0.5
106,049 - +1.2
106,167 + Ac3H11_102 0.16 +0.8
106,167 + Ac3H11_102 0.16 +0.3
106,174 + Ac3H11_102 0.16 +1.1
106,182 + Ac3H11_102 0.17 -0.2
106,182 + Ac3H11_102 0.17 +0.8
106,182 + Ac3H11_102 0.17 -0.4
106,182 + Ac3H11_102 0.17 -0.1
106,183 - Ac3H11_102 0.17 +0.5
106,183 - Ac3H11_102 0.17 -1.6
106,458 + Ac3H11_102 0.49 -0.2
106,557 + Ac3H11_102 0.60 +0.3
106,557 + Ac3H11_102 0.60 +0.4
106,606 - Ac3H11_102 0.65 -0.0
106,671 + Ac3H11_102 0.73 +0.0
106,672 - Ac3H11_102 0.73 -1.6
106,809 + Ac3H11_102 0.88 -0.9
106,810 - Ac3H11_102 0.89 +0.3
106,810 - Ac3H11_102 0.89 +0.0
107,077 + Ac3H11_103 0.16 +0.4
107,197 + Ac3H11_103 0.27 +1.5
107,197 + Ac3H11_103 0.27 -0.1
107,197 + Ac3H11_103 0.27 +0.8
107,198 - Ac3H11_103 0.27 -0.7
107,198 - Ac3H11_103 0.27 -1.0
107,198 - Ac3H11_103 0.27 -0.4
107,198 - Ac3H11_103 0.27 +1.1
107,323 + Ac3H11_103 0.39 +0.2
107,324 - Ac3H11_103 0.39 +1.1
107,374 + Ac3H11_103 0.44 +2.4
107,375 - Ac3H11_103 0.44 -1.4
107,518 + Ac3H11_103 0.58 -0.6
107,608 + Ac3H11_103 0.66 +0.1
107,609 - Ac3H11_103 0.66 -0.1
107,763 + Ac3H11_103 0.81 +0.3
107,764 - Ac3H11_103 0.81 -0.8
107,776 + Ac3H11_103 0.82 -0.1
107,776 + Ac3H11_103 0.82 +0.8

Or see this region's nucleotide sequence