Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10370

Experiment: Benzethonium chloride 0.003 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10355 and AZOBR_RS10360 are separated by 107 nucleotidesAZOBR_RS10360 and AZOBR_RS10365 are separated by 30 nucleotidesAZOBR_RS10365 and AZOBR_RS10370 are separated by 252 nucleotidesAZOBR_RS10370 and AZOBR_RS10375 are separated by 380 nucleotides AZOBR_RS10355: AZOBR_RS10355 - membrane protein, at 2,176,963 to 2,177,427 _RS10355 AZOBR_RS10360: AZOBR_RS10360 - tRNA-Ala, at 2,177,535 to 2,177,610 _RS10360 AZOBR_RS10365: AZOBR_RS10365 - tRNA-Leu, at 2,177,641 to 2,177,727 _RS10365 AZOBR_RS10370: AZOBR_RS10370 - hypothetical protein, at 2,177,980 to 2,180,157 _RS10370 AZOBR_RS10375: AZOBR_RS10375 - glyceraldehyde-3-phosphate dehydrogenase, at 2,180,538 to 2,181,545 _RS10375 Position (kb) 2177 2178 2179 2180 2181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2177.053 kb on + strand, within AZOBR_RS10355at 2177.317 kb on + strand, within AZOBR_RS10355at 2177.613 kb on + strandat 2177.616 kb on - strandat 2177.616 kb on - strandat 2177.777 kb on + strandat 2177.779 kb on + strandat 2177.865 kb on - strandat 2178.248 kb on + strand, within AZOBR_RS10370at 2178.248 kb on + strand, within AZOBR_RS10370at 2178.248 kb on + strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.249 kb on - strand, within AZOBR_RS10370at 2178.251 kb on + strand, within AZOBR_RS10370at 2178.251 kb on + strand, within AZOBR_RS10370at 2178.252 kb on - strand, within AZOBR_RS10370at 2178.867 kb on - strand, within AZOBR_RS10370at 2178.918 kb on + strand, within AZOBR_RS10370at 2178.918 kb on + strand, within AZOBR_RS10370at 2179.070 kb on + strand, within AZOBR_RS10370at 2179.070 kb on + strand, within AZOBR_RS10370at 2179.071 kb on - strand, within AZOBR_RS10370at 2179.071 kb on - strand, within AZOBR_RS10370at 2179.071 kb on - strand, within AZOBR_RS10370at 2179.071 kb on - strand, within AZOBR_RS10370at 2179.071 kb on - strand, within AZOBR_RS10370at 2179.304 kb on + strand, within AZOBR_RS10370at 2179.305 kb on - strand, within AZOBR_RS10370at 2179.305 kb on - strand, within AZOBR_RS10370at 2179.305 kb on - strand, within AZOBR_RS10370at 2179.305 kb on - strand, within AZOBR_RS10370at 2179.359 kb on - strand, within AZOBR_RS10370at 2180.937 kb on + strand, within AZOBR_RS10375at 2181.082 kb on - strand, within AZOBR_RS10375at 2181.082 kb on - strand, within AZOBR_RS10375

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.003 mM
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2,177,053 + AZOBR_RS10355 0.19 +0.7
2,177,317 + AZOBR_RS10355 0.76 -0.9
2,177,613 + -1.8
2,177,616 - +0.5
2,177,616 - +0.6
2,177,777 + +1.1
2,177,779 + -1.6
2,177,865 - -0.6
2,178,248 + AZOBR_RS10370 0.12 +0.8
2,178,248 + AZOBR_RS10370 0.12 +1.6
2,178,248 + AZOBR_RS10370 0.12 -0.8
2,178,249 - AZOBR_RS10370 0.12 +0.8
2,178,249 - AZOBR_RS10370 0.12 -0.5
2,178,249 - AZOBR_RS10370 0.12 +1.8
2,178,249 - AZOBR_RS10370 0.12 -0.5
2,178,251 + AZOBR_RS10370 0.12 -0.2
2,178,251 + AZOBR_RS10370 0.12 -0.4
2,178,252 - AZOBR_RS10370 0.12 +0.4
2,178,867 - AZOBR_RS10370 0.41 -0.9
2,178,918 + AZOBR_RS10370 0.43 +1.6
2,178,918 + AZOBR_RS10370 0.43 +0.8
2,179,070 + AZOBR_RS10370 0.50 -0.5
2,179,070 + AZOBR_RS10370 0.50 +1.3
2,179,071 - AZOBR_RS10370 0.50 -0.5
2,179,071 - AZOBR_RS10370 0.50 -0.4
2,179,071 - AZOBR_RS10370 0.50 +0.7
2,179,071 - AZOBR_RS10370 0.50 +1.5
2,179,071 - AZOBR_RS10370 0.50 +0.9
2,179,304 + AZOBR_RS10370 0.61 +0.3
2,179,305 - AZOBR_RS10370 0.61 -0.1
2,179,305 - AZOBR_RS10370 0.61 +0.6
2,179,305 - AZOBR_RS10370 0.61 +0.1
2,179,305 - AZOBR_RS10370 0.61 -0.2
2,179,359 - AZOBR_RS10370 0.63 -2.8
2,180,937 + AZOBR_RS10375 0.40 +0.6
2,181,082 - AZOBR_RS10375 0.54 +1.4
2,181,082 - AZOBR_RS10375 0.54 +0.3

Or see this region's nucleotide sequence