Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05435

Experiment: Benzethonium chloride 0.003 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05435 and AZOBR_RS05440 are separated by 411 nucleotides AZOBR_RS05435: AZOBR_RS05435 - recombinase RecD, at 1,154,171 to 1,156,363 _RS05435 AZOBR_RS05440: AZOBR_RS05440 - cold-shock protein, at 1,156,775 to 1,157,344 _RS05440 Position (kb) 1154 1155 1156 1157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1153.348 kb on - strandat 1153.348 kb on - strandat 1153.446 kb on + strandat 1153.510 kb on + strandat 1153.510 kb on + strandat 1153.657 kb on + strandat 1153.723 kb on + strandat 1153.724 kb on - strandat 1153.724 kb on - strandat 1153.954 kb on - strandat 1154.066 kb on + strandat 1154.066 kb on + strandat 1154.066 kb on + strandat 1154.067 kb on - strandat 1154.067 kb on - strandat 1154.152 kb on + strandat 1154.152 kb on + strandat 1154.152 kb on + strandat 1154.152 kb on + strandat 1154.152 kb on + strandat 1154.152 kb on + strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.153 kb on - strandat 1154.172 kb on + strandat 1154.459 kb on + strand, within AZOBR_RS05435at 1154.460 kb on - strand, within AZOBR_RS05435at 1154.460 kb on - strand, within AZOBR_RS05435at 1154.712 kb on - strand, within AZOBR_RS05435at 1154.712 kb on - strand, within AZOBR_RS05435at 1154.861 kb on + strand, within AZOBR_RS05435at 1154.862 kb on - strand, within AZOBR_RS05435at 1154.862 kb on - strand, within AZOBR_RS05435at 1155.136 kb on + strand, within AZOBR_RS05435at 1155.712 kb on - strand, within AZOBR_RS05435at 1155.740 kb on + strand, within AZOBR_RS05435at 1155.740 kb on + strand, within AZOBR_RS05435at 1155.740 kb on + strand, within AZOBR_RS05435at 1155.741 kb on - strand, within AZOBR_RS05435at 1155.741 kb on - strand, within AZOBR_RS05435at 1155.741 kb on - strand, within AZOBR_RS05435at 1155.741 kb on - strand, within AZOBR_RS05435at 1155.741 kb on - strand, within AZOBR_RS05435at 1156.013 kb on + strand, within AZOBR_RS05435at 1156.097 kb on + strand, within AZOBR_RS05435at 1156.097 kb on + strand, within AZOBR_RS05435at 1156.098 kb on - strand, within AZOBR_RS05435at 1156.133 kb on + strand, within AZOBR_RS05435at 1156.233 kb on - strandat 1156.359 kb on + strandat 1156.360 kb on - strandat 1156.439 kb on - strandat 1156.684 kb on - strandat 1156.699 kb on - strandat 1156.699 kb on - strandat 1156.716 kb on + strandat 1156.716 kb on + strandat 1156.716 kb on + strandat 1156.717 kb on - strandat 1156.717 kb on - strandat 1156.717 kb on - strandat 1156.717 kb on - strandat 1156.924 kb on + strand, within AZOBR_RS05440at 1156.925 kb on - strand, within AZOBR_RS05440

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.003 mM
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1,153,348 - +0.6
1,153,348 - -2.7
1,153,446 + +0.1
1,153,510 + -1.0
1,153,510 + +0.0
1,153,657 + +0.4
1,153,723 + -2.4
1,153,724 - -1.5
1,153,724 - +1.2
1,153,954 - +0.3
1,154,066 + -0.1
1,154,066 + +0.8
1,154,066 + +0.2
1,154,067 - -0.5
1,154,067 - +0.3
1,154,152 + -0.0
1,154,152 + +1.4
1,154,152 + +0.3
1,154,152 + -0.3
1,154,152 + -4.0
1,154,152 + +0.7
1,154,153 - -2.7
1,154,153 - +0.0
1,154,153 - +0.0
1,154,153 - +0.4
1,154,153 - +0.4
1,154,153 - +0.9
1,154,153 - -4.5
1,154,153 - -1.4
1,154,153 - +1.0
1,154,153 - +0.4
1,154,153 - +0.6
1,154,172 + +0.4
1,154,459 + AZOBR_RS05435 0.13 +2.3
1,154,460 - AZOBR_RS05435 0.13 +1.0
1,154,460 - AZOBR_RS05435 0.13 +0.7
1,154,712 - AZOBR_RS05435 0.25 +1.0
1,154,712 - AZOBR_RS05435 0.25 +0.2
1,154,861 + AZOBR_RS05435 0.31 +0.1
1,154,862 - AZOBR_RS05435 0.32 -3.8
1,154,862 - AZOBR_RS05435 0.32 +0.4
1,155,136 + AZOBR_RS05435 0.44 -0.0
1,155,712 - AZOBR_RS05435 0.70 -0.6
1,155,740 + AZOBR_RS05435 0.72 +0.9
1,155,740 + AZOBR_RS05435 0.72 +0.2
1,155,740 + AZOBR_RS05435 0.72 -0.1
1,155,741 - AZOBR_RS05435 0.72 +0.1
1,155,741 - AZOBR_RS05435 0.72 +0.1
1,155,741 - AZOBR_RS05435 0.72 +0.1
1,155,741 - AZOBR_RS05435 0.72 +1.4
1,155,741 - AZOBR_RS05435 0.72 -0.1
1,156,013 + AZOBR_RS05435 0.84 +0.1
1,156,097 + AZOBR_RS05435 0.88 -0.1
1,156,097 + AZOBR_RS05435 0.88 -1.3
1,156,098 - AZOBR_RS05435 0.88 +0.3
1,156,133 + AZOBR_RS05435 0.89 +0.1
1,156,233 - +0.9
1,156,359 + -0.8
1,156,360 - +0.2
1,156,439 - -0.4
1,156,684 - -0.5
1,156,699 - +0.7
1,156,699 - -3.1
1,156,716 + +0.4
1,156,716 + +0.3
1,156,716 + +0.5
1,156,717 - -0.4
1,156,717 - +2.2
1,156,717 - +0.3
1,156,717 - -1.9
1,156,924 + AZOBR_RS05440 0.26 +0.3
1,156,925 - AZOBR_RS05440 0.26 -0.0

Or see this region's nucleotide sequence