Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS22355

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
1,769,167	-				-0.5
1,769,171	+				-1.0
1,769,172	-				-0.8
1,769,172	-				-0.4
1,769,224	+				-0.7
1,769,225	-				-1.4
1,769,225	-				-1.4
1,769,225	-				-0.1
1,769,565	+		RALBFv3_RS24725	0.43	-0.2
1,769,565	+		RALBFv3_RS24725	0.43	-1.1
1,769,565	+		RALBFv3_RS24725	0.43	-0.6
1,769,710	+		RALBFv3_RS24725	0.59	+0.7
1,769,710	+		RALBFv3_RS24725	0.59	-0.7
1,769,725	+		RALBFv3_RS24725	0.60	+2.8
1,769,746	+		RALBFv3_RS24725	0.63	+0.1
1,769,747	-		RALBFv3_RS24725	0.63	-0.5
1,769,871	+		RALBFv3_RS24725	0.76	-1.3
1,769,871	+		RALBFv3_RS24725	0.76	+0.1
1,769,871	+		RALBFv3_RS24725	0.76	+0.6
1,769,872	-		RALBFv3_RS24725	0.76	-0.8
1,769,989	+		RALBFv3_RS24725	0.89	+0.9
1,769,989	+		RALBFv3_RS24725	0.89	-0.4
1,769,989	+		RALBFv3_RS24725	0.89	+0.7
1,769,989	+		RALBFv3_RS24725	0.89	+0.0
1,769,989	+		RALBFv3_RS24725	0.89	-0.1
1,769,989	+		RALBFv3_RS24725	0.89	+0.8
1,769,989	+		RALBFv3_RS24725	0.89	-0.9
1,769,990	-		RALBFv3_RS24725	0.89	+3.8
1,769,990	-		RALBFv3_RS24725	0.89	+0.9
1,769,990	-		RALBFv3_RS24725	0.89	-0.5
1,769,990	-		RALBFv3_RS24725	0.89	+0.4
1,769,990	-		RALBFv3_RS24725	0.89	-0.2
1,770,002	-				-0.7
1,770,002	-				-0.3
1,770,076	+				+0.3
1,770,077	-				-3.3
1,770,077	-				-1.0
1,770,077	-				-0.8
1,770,077	-				+0.1
1,770,091	+				-0.7
1,770,091	+				-0.1
1,770,091	+				+0.1
1,770,092	-				-0.2
1,770,194	-				-1.0
1,770,274	+				-1.4
1,770,274	+				-0.9
1,770,274	+				-0.4
1,770,274	+				+0.1
1,770,275	-				-0.5
1,770,275	-				-0.8
1,770,275	-				-0.3
1,770,275	-				-0.4
1,770,275	-				+0.3
1,770,276	-				-0.2
1,770,456	+		RALBFv3_RS22355	0.20	-0.7
1,770,457	-		RALBFv3_RS22355	0.20	-1.5
1,770,555	+		RALBFv3_RS22355	0.26	+0.4
1,770,598	+		RALBFv3_RS22355	0.29	+2.5
1,770,599	-		RALBFv3_RS22355	0.29	+0.3
1,770,599	-		RALBFv3_RS22355	0.29	-1.1
1,770,613	+		RALBFv3_RS22355	0.30	-0.2
1,770,658	+		RALBFv3_RS22355	0.32	-0.4
1,770,659	-		RALBFv3_RS22355	0.33	-0.1
1,770,695	+		RALBFv3_RS22355	0.35	+0.3
1,770,696	-		RALBFv3_RS22355	0.35	+0.7
1,771,012	-		RALBFv3_RS22355	0.55	-0.8
1,771,012	-		RALBFv3_RS22355	0.55	-1.0
1,771,012	-		RALBFv3_RS22355	0.55	-0.9
1,771,072	+		RALBFv3_RS22355	0.59	+0.9
1,771,072	+		RALBFv3_RS22355	0.59	-1.8
1,771,073	-		RALBFv3_RS22355	0.59	-0.5
1,771,073	-		RALBFv3_RS22355	0.59	-0.8
1,771,073	-		RALBFv3_RS22355	0.59	+0.7
1,771,076	+		RALBFv3_RS22355	0.59	-0.1
1,771,076	+		RALBFv3_RS22355	0.59	-0.9
1,771,076	+		RALBFv3_RS22355	0.59	-0.7
1,771,077	-		RALBFv3_RS22355	0.59	+0.8
1,771,077	-		RALBFv3_RS22355	0.59	+0.4
1,771,077	-		RALBFv3_RS22355	0.59	-0.6
1,771,077	-		RALBFv3_RS22355	0.59	-0.1
1,771,077	-		RALBFv3_RS22355	0.59	+0.5
1,771,146	+		RALBFv3_RS22355	0.63	+0.2
1,771,147	-		RALBFv3_RS22355	0.64	-0.1
1,771,147	-		RALBFv3_RS22355	0.64	+1.3
1,771,147	-		RALBFv3_RS22355	0.64	-1.7
1,771,262	+		RALBFv3_RS22355	0.71	+0.0
1,771,262	+		RALBFv3_RS22355	0.71	+1.9
1,771,263	-		RALBFv3_RS22355	0.71	-0.3
1,771,263	-		RALBFv3_RS22355	0.71	+0.7
1,771,263	-		RALBFv3_RS22355	0.71	+1.8
1,771,266	+		RALBFv3_RS22355	0.71	+0.6
1,771,267	-		RALBFv3_RS22355	0.71	-0.3
1,771,267	-		RALBFv3_RS22355	0.71	-0.1
1,771,267	-		RALBFv3_RS22355	0.71	+1.3
1,771,341	+		RALBFv3_RS22355	0.76	+0.2
1,771,342	-		RALBFv3_RS22355	0.76	+0.7
1,771,353	-		RALBFv3_RS22355	0.77	-1.1
1,771,457	+		RALBFv3_RS22355	0.83	+0.8
1,771,498	+		RALBFv3_RS22355	0.86	-1.2
1,771,498	+		RALBFv3_RS22355	0.86	-0.3
1,771,498	+		RALBFv3_RS22355	0.86	+0.0
1,771,498	+		RALBFv3_RS22355	0.86	-1.0
1,771,498	+		RALBFv3_RS22355	0.86	-0.6
1,771,499	-		RALBFv3_RS22355	0.86	+4.4
1,771,499	-		RALBFv3_RS22355	0.86	+2.0
1,771,499	-		RALBFv3_RS22355	0.86	+1.4
1,771,556	+		RALBFv3_RS22355	0.90	+0.4
1,771,556	+		RALBFv3_RS22355	0.90	+0.2
1,771,557	-		RALBFv3_RS22355	0.90	-0.2
1,771,557	-		RALBFv3_RS22355	0.90	-0.6
1,771,557	-		RALBFv3_RS22355	0.90	-1.3
1,771,557	-		RALBFv3_RS22355	0.90	-1.1
1,771,561	+		RALBFv3_RS22355	0.90	+1.1
1,771,561	+		RALBFv3_RS22355	0.90	+0.4
1,771,561	+		RALBFv3_RS22355	0.90	+3.4
1,771,562	-				+0.9
1,771,714	+				+0.4
1,771,714	+				+0.3
1,771,715	-				-0.0
1,771,742	-				-0.5
1,771,833	-		RALBFv3_RS22360	0.20	+1.6
1,771,834	-		RALBFv3_RS22360	0.20	-0.5
1,771,987	-		RALBFv3_RS22360	0.47	-0.7
1,771,987	-		RALBFv3_RS22360	0.47	-0.1
1,772,040	+		RALBFv3_RS22360	0.56	-0.1
1,772,040	+		RALBFv3_RS22360	0.56	-0.1
1,772,040	+		RALBFv3_RS22360	0.56	-0.8
1,772,040	+		RALBFv3_RS22360	0.56	+0.6
1,772,097	+		RALBFv3_RS22360	0.66	-0.4
1,772,098	-		RALBFv3_RS22360	0.66	-0.3
1,772,098	-		RALBFv3_RS22360	0.66	-1.4
1,772,149	-		RALBFv3_RS22360	0.75	-1.4
1,772,208	+		RALBFv3_RS22360	0.85	-0.3
1,772,208	+		RALBFv3_RS22360	0.85	+0.0
1,772,208	+		RALBFv3_RS22360	0.85	-0.8
1,772,208	+		RALBFv3_RS22360	0.85	-0.8
1,772,208	+		RALBFv3_RS22360	0.85	-0.9
1,772,209	-		RALBFv3_RS22360	0.86	+0.9
1,772,209	-		RALBFv3_RS22360	0.86	-0.6
1,772,209	-		RALBFv3_RS22360	0.86	+1.6
1,772,209	-		RALBFv3_RS22360	0.86	+0.9
1,772,209	-		RALBFv3_RS22360	0.86	-0.3
1,772,209	-		RALBFv3_RS22360	0.86	+1.9
1,772,209	-		RALBFv3_RS22360	0.86	-1.3
1,772,209	-		RALBFv3_RS22360	0.86	-0.6
1,772,296	+				-0.7
1,772,352	-				+0.7
1,772,397	+		RALBFv3_RS22365	0.12	-0.9
1,772,397	+		RALBFv3_RS22365	0.12	-0.6
1,772,397	+		RALBFv3_RS22365	0.12	+2.9
1,772,398	-		RALBFv3_RS22365	0.12	+0.0
1,772,398	-		RALBFv3_RS22365	0.12	+0.1
1,772,398	-		RALBFv3_RS22365	0.12	-0.2
1,772,398	-		RALBFv3_RS22365	0.12	-1.1
1,772,409	-		RALBFv3_RS22365	0.13	+1.4
1,772,430	+		RALBFv3_RS22365	0.16	+1.2
1,772,431	-		RALBFv3_RS22365	0.16	-0.4
1,772,432	+		RALBFv3_RS22365	0.16	+0.1
1,772,432	+		RALBFv3_RS22365	0.16	+0.6
1,772,432	+		RALBFv3_RS22365	0.16	-1.5
1,772,432	+		RALBFv3_RS22365	0.16	-1.6
1,772,432	+		RALBFv3_RS22365	0.16	-2.6
1,772,433	-		RALBFv3_RS22365	0.16	-1.0
1,772,433	-		RALBFv3_RS22365	0.16	-3.7
1,772,437	-		RALBFv3_RS22365	0.16	+0.1
1,772,437	-		RALBFv3_RS22365	0.16	-0.5
1,772,468	+		RALBFv3_RS22365	0.20	-0.7
1,772,510	+		RALBFv3_RS22365	0.24	-0.6
1,772,510	+		RALBFv3_RS22365	0.24	+0.6
1,772,559	+		RALBFv3_RS22365	0.30	-0.1
1,772,559	+		RALBFv3_RS22365	0.30	+2.2
1,772,578	-		RALBFv3_RS22365	0.32	-1.8
1,772,578	-		RALBFv3_RS22365	0.32	-0.7
1,772,583	+		RALBFv3_RS22365	0.33	-2.2
1,772,584	-		RALBFv3_RS22365	0.33	-0.8
1,772,584	-		RALBFv3_RS22365	0.33	-2.3
1,772,610	+		RALBFv3_RS22365	0.36	-1.1
1,772,654	+		RALBFv3_RS22365	0.41	-1.7
1,772,655	-		RALBFv3_RS22365	0.41	-0.6
1,772,710	+		RALBFv3_RS22365	0.47	-0.5
1,772,710	+		RALBFv3_RS22365	0.47	+1.5
1,772,711	-		RALBFv3_RS22365	0.47	+0.0