Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21455

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS21450 and RALBFv3_RS21455 are separated by 2 nucleotidesRALBFv3_RS21455 and RALBFv3_RS21460 are separated by 96 nucleotides RALBFv3_RS21450: RALBFv3_RS21450 - 2,3-diaminopropionate biosynthesis protein SbnB, at 1,535,515 to 1,536,534 _RS21450 RALBFv3_RS21455: RALBFv3_RS21455 - 2,3-diaminopropionate biosynthesis protein SbnA, at 1,536,537 to 1,537,553 _RS21455 RALBFv3_RS21460: RALBFv3_RS21460 - TonB-dependent siderophore receptor, at 1,537,650 to 1,540,076 _RS21460 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1535.565 kb on - strandat 1535.792 kb on + strand, within RALBFv3_RS21450at 1535.858 kb on + strand, within RALBFv3_RS21450at 1536.204 kb on - strand, within RALBFv3_RS21450at 1536.326 kb on + strand, within RALBFv3_RS21450at 1536.326 kb on + strand, within RALBFv3_RS21450at 1536.326 kb on + strand, within RALBFv3_RS21450at 1536.327 kb on - strand, within RALBFv3_RS21450at 1536.384 kb on - strand, within RALBFv3_RS21450at 1536.452 kb on + strandat 1536.453 kb on - strandat 1536.504 kb on - strandat 1536.504 kb on - strandat 1536.504 kb on - strandat 1536.811 kb on + strand, within RALBFv3_RS21455at 1536.812 kb on - strand, within RALBFv3_RS21455at 1537.078 kb on + strand, within RALBFv3_RS21455at 1537.078 kb on + strand, within RALBFv3_RS21455at 1537.078 kb on + strand, within RALBFv3_RS21455at 1537.079 kb on - strand, within RALBFv3_RS21455at 1537.232 kb on - strand, within RALBFv3_RS21455at 1537.232 kb on - strand, within RALBFv3_RS21455at 1537.408 kb on + strand, within RALBFv3_RS21455at 1537.409 kb on - strand, within RALBFv3_RS21455at 1537.468 kb on - strandat 1537.489 kb on + strandat 1537.651 kb on + strandat 1537.652 kb on - strandat 1537.666 kb on + strandat 1537.666 kb on + strandat 1537.667 kb on - strandat 1537.667 kb on - strandat 1537.667 kb on - strandat 1537.712 kb on + strandat 1537.712 kb on + strandat 1537.739 kb on - strandat 1537.750 kb on + strandat 1537.810 kb on + strandat 1537.810 kb on + strandat 1537.810 kb on + strandat 1537.811 kb on - strandat 1537.811 kb on - strandat 1537.811 kb on - strandat 1537.838 kb on - strandat 1538.042 kb on - strand, within RALBFv3_RS21460at 1538.186 kb on - strand, within RALBFv3_RS21460at 1538.245 kb on + strand, within RALBFv3_RS21460at 1538.245 kb on + strand, within RALBFv3_RS21460at 1538.245 kb on + strand, within RALBFv3_RS21460at 1538.246 kb on - strand, within RALBFv3_RS21460at 1538.246 kb on - strand, within RALBFv3_RS21460at 1538.246 kb on - strand, within RALBFv3_RS21460at 1538.246 kb on - strand, within RALBFv3_RS21460at 1538.359 kb on + strand, within RALBFv3_RS21460at 1538.360 kb on - strand, within RALBFv3_RS21460at 1538.360 kb on - strand, within RALBFv3_RS21460at 1538.386 kb on + strand, within RALBFv3_RS21460at 1538.386 kb on + strand, within RALBFv3_RS21460at 1538.387 kb on - strand, within RALBFv3_RS21460at 1538.387 kb on - strand, within RALBFv3_RS21460at 1538.387 kb on - strand, within RALBFv3_RS21460at 1538.446 kb on + strand, within RALBFv3_RS21460at 1538.446 kb on + strand, within RALBFv3_RS21460at 1538.447 kb on - strand, within RALBFv3_RS21460at 1538.447 kb on - strand, within RALBFv3_RS21460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
remove
1,535,565 - +1.9
1,535,792 + RALBFv3_RS21450 0.27 -0.3
1,535,858 + RALBFv3_RS21450 0.34 -0.6
1,536,204 - RALBFv3_RS21450 0.68 +0.4
1,536,326 + RALBFv3_RS21450 0.80 -0.9
1,536,326 + RALBFv3_RS21450 0.80 -0.6
1,536,326 + RALBFv3_RS21450 0.80 +0.8
1,536,327 - RALBFv3_RS21450 0.80 -0.2
1,536,384 - RALBFv3_RS21450 0.85 -0.0
1,536,452 + +0.7
1,536,453 - -0.8
1,536,504 - -2.2
1,536,504 - -0.9
1,536,504 - -0.5
1,536,811 + RALBFv3_RS21455 0.27 +0.3
1,536,812 - RALBFv3_RS21455 0.27 +2.2
1,537,078 + RALBFv3_RS21455 0.53 +3.4
1,537,078 + RALBFv3_RS21455 0.53 -2.4
1,537,078 + RALBFv3_RS21455 0.53 -0.6
1,537,079 - RALBFv3_RS21455 0.53 -0.9
1,537,232 - RALBFv3_RS21455 0.68 -0.4
1,537,232 - RALBFv3_RS21455 0.68 -1.3
1,537,408 + RALBFv3_RS21455 0.86 -1.3
1,537,409 - RALBFv3_RS21455 0.86 +0.5
1,537,468 - +2.5
1,537,489 + -1.1
1,537,651 + +1.0
1,537,652 - -1.8
1,537,666 + +2.5
1,537,666 + -0.2
1,537,667 - -1.4
1,537,667 - -0.2
1,537,667 - -0.5
1,537,712 + -0.6
1,537,712 + -1.0
1,537,739 - -0.8
1,537,750 + -0.2
1,537,810 + -0.6
1,537,810 + -1.5
1,537,810 + -0.7
1,537,811 - +0.1
1,537,811 - -0.6
1,537,811 - +0.1
1,537,838 - -1.0
1,538,042 - RALBFv3_RS21460 0.16 +0.3
1,538,186 - RALBFv3_RS21460 0.22 +0.7
1,538,245 + RALBFv3_RS21460 0.25 -0.8
1,538,245 + RALBFv3_RS21460 0.25 +0.4
1,538,245 + RALBFv3_RS21460 0.25 -1.3
1,538,246 - RALBFv3_RS21460 0.25 +3.1
1,538,246 - RALBFv3_RS21460 0.25 +1.3
1,538,246 - RALBFv3_RS21460 0.25 +0.4
1,538,246 - RALBFv3_RS21460 0.25 -0.4
1,538,359 + RALBFv3_RS21460 0.29 -2.3
1,538,360 - RALBFv3_RS21460 0.29 -0.1
1,538,360 - RALBFv3_RS21460 0.29 +0.1
1,538,386 + RALBFv3_RS21460 0.30 +0.1
1,538,386 + RALBFv3_RS21460 0.30 +1.1
1,538,387 - RALBFv3_RS21460 0.30 -1.4
1,538,387 - RALBFv3_RS21460 0.30 +3.9
1,538,387 - RALBFv3_RS21460 0.30 +0.9
1,538,446 + RALBFv3_RS21460 0.33 -2.8
1,538,446 + RALBFv3_RS21460 0.33 -0.5
1,538,447 - RALBFv3_RS21460 0.33 +0.1
1,538,447 - RALBFv3_RS21460 0.33 -1.1

Or see this region's nucleotide sequence