Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21200

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21190 and RALBFv3_RS21195 are separated by 21 nucleotidesRALBFv3_RS21195 and RALBFv3_RS21200 are separated by 9 nucleotidesRALBFv3_RS21200 and RALBFv3_RS21205 are separated by 248 nucleotides RALBFv3_RS21190: RALBFv3_RS21190 - DUF2334 domain-containing protein, at 1,473,638 to 1,475,374 _RS21190 RALBFv3_RS21195: RALBFv3_RS21195 - hypothetical protein, at 1,475,396 to 1,475,713 _RS21195 RALBFv3_RS21200: RALBFv3_RS21200 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,475,723 to 1,476,982 _RS21200 RALBFv3_RS21205: RALBFv3_RS21205 - bacteriophage N4 adsorption protein A, at 1,477,231 to 1,478,982 _RS21205 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -2 -1 0 1 2at 1474.774 kb on - strand, within RALBFv3_RS21190at 1474.774 kb on - strand, within RALBFv3_RS21190at 1474.777 kb on - strand, within RALBFv3_RS21190at 1474.777 kb on - strand, within RALBFv3_RS21190at 1474.800 kb on + strand, within RALBFv3_RS21190at 1474.800 kb on + strand, within RALBFv3_RS21190at 1474.801 kb on - strand, within RALBFv3_RS21190at 1474.801 kb on - strand, within RALBFv3_RS21190at 1474.906 kb on - strand, within RALBFv3_RS21190at 1474.938 kb on + strand, within RALBFv3_RS21190at 1474.939 kb on - strand, within RALBFv3_RS21190at 1474.939 kb on - strand, within RALBFv3_RS21190at 1474.939 kb on - strand, within RALBFv3_RS21190at 1475.010 kb on + strand, within RALBFv3_RS21190at 1475.010 kb on + strand, within RALBFv3_RS21190at 1475.010 kb on + strand, within RALBFv3_RS21190at 1475.011 kb on - strand, within RALBFv3_RS21190at 1475.011 kb on - strand, within RALBFv3_RS21190at 1475.014 kb on - strand, within RALBFv3_RS21190at 1475.025 kb on + strand, within RALBFv3_RS21190at 1475.025 kb on + strand, within RALBFv3_RS21190at 1475.025 kb on + strand, within RALBFv3_RS21190at 1475.025 kb on + strand, within RALBFv3_RS21190at 1475.025 kb on + strand, within RALBFv3_RS21190at 1475.026 kb on - strand, within RALBFv3_RS21190at 1475.040 kb on + strand, within RALBFv3_RS21190at 1475.064 kb on + strand, within RALBFv3_RS21190at 1475.065 kb on - strand, within RALBFv3_RS21190at 1475.118 kb on + strand, within RALBFv3_RS21190at 1475.118 kb on + strand, within RALBFv3_RS21190at 1475.118 kb on + strand, within RALBFv3_RS21190at 1475.118 kb on + strand, within RALBFv3_RS21190at 1475.118 kb on + strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.119 kb on - strand, within RALBFv3_RS21190at 1475.155 kb on - strand, within RALBFv3_RS21190at 1475.155 kb on - strand, within RALBFv3_RS21190at 1475.155 kb on - strand, within RALBFv3_RS21190at 1475.178 kb on + strand, within RALBFv3_RS21190at 1475.178 kb on + strand, within RALBFv3_RS21190at 1475.179 kb on - strand, within RALBFv3_RS21190at 1475.603 kb on + strand, within RALBFv3_RS21195at 1475.603 kb on + strand, within RALBFv3_RS21195at 1475.603 kb on + strand, within RALBFv3_RS21195at 1475.603 kb on + strand, within RALBFv3_RS21195at 1475.724 kb on + strandat 1475.724 kb on + strandat 1475.742 kb on - strandat 1475.742 kb on - strandat 1475.742 kb on - strandat 1475.943 kb on + strand, within RALBFv3_RS21200at 1475.943 kb on + strand, within RALBFv3_RS21200at 1475.944 kb on - strand, within RALBFv3_RS21200at 1475.944 kb on - strand, within RALBFv3_RS21200at 1476.147 kb on + strand, within RALBFv3_RS21200at 1476.163 kb on - strand, within RALBFv3_RS21200at 1476.163 kb on - strand, within RALBFv3_RS21200at 1476.163 kb on - strand, within RALBFv3_RS21200at 1476.252 kb on + strand, within RALBFv3_RS21200at 1476.436 kb on - strand, within RALBFv3_RS21200at 1476.726 kb on + strand, within RALBFv3_RS21200at 1476.726 kb on + strand, within RALBFv3_RS21200at 1476.726 kb on + strand, within RALBFv3_RS21200at 1476.727 kb on - strand, within RALBFv3_RS21200at 1476.727 kb on - strand, within RALBFv3_RS21200at 1476.727 kb on - strand, within RALBFv3_RS21200at 1476.727 kb on - strand, within RALBFv3_RS21200at 1476.730 kb on + strand, within RALBFv3_RS21200at 1477.031 kb on + strandat 1477.031 kb on + strandat 1477.031 kb on + strandat 1477.031 kb on + strandat 1477.032 kb on - strandat 1477.337 kb on + strandat 1477.446 kb on - strand, within RALBFv3_RS21205at 1477.485 kb on + strand, within RALBFv3_RS21205at 1477.486 kb on - strand, within RALBFv3_RS21205at 1477.538 kb on + strand, within RALBFv3_RS21205at 1477.538 kb on + strand, within RALBFv3_RS21205at 1477.553 kb on + strand, within RALBFv3_RS21205at 1477.554 kb on - strand, within RALBFv3_RS21205at 1477.554 kb on - strand, within RALBFv3_RS21205at 1477.554 kb on - strand, within RALBFv3_RS21205at 1477.554 kb on - strand, within RALBFv3_RS21205at 1477.713 kb on - strand, within RALBFv3_RS21205at 1477.847 kb on + strand, within RALBFv3_RS21205at 1477.847 kb on + strand, within RALBFv3_RS21205at 1477.847 kb on + strand, within RALBFv3_RS21205at 1477.847 kb on + strand, within RALBFv3_RS21205at 1477.847 kb on + strand, within RALBFv3_RS21205at 1477.848 kb on - strand, within RALBFv3_RS21205at 1477.848 kb on - strand, within RALBFv3_RS21205at 1477.938 kb on + strand, within RALBFv3_RS21205at 1477.938 kb on + strand, within RALBFv3_RS21205at 1477.938 kb on + strand, within RALBFv3_RS21205at 1477.938 kb on + strand, within RALBFv3_RS21205at 1477.939 kb on - strand, within RALBFv3_RS21205

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,474,774 - RALBFv3_RS21190 0.65 +0.3
1,474,774 - RALBFv3_RS21190 0.65 -1.8
1,474,777 - RALBFv3_RS21190 0.66 +0.6
1,474,777 - RALBFv3_RS21190 0.66 +0.1
1,474,800 + RALBFv3_RS21190 0.67 -0.5
1,474,800 + RALBFv3_RS21190 0.67 +1.3
1,474,801 - RALBFv3_RS21190 0.67 +0.1
1,474,801 - RALBFv3_RS21190 0.67 -0.1
1,474,906 - RALBFv3_RS21190 0.73 +0.1
1,474,938 + RALBFv3_RS21190 0.75 +0.7
1,474,939 - RALBFv3_RS21190 0.75 -1.7
1,474,939 - RALBFv3_RS21190 0.75 -0.1
1,474,939 - RALBFv3_RS21190 0.75 +1.0
1,475,010 + RALBFv3_RS21190 0.79 -0.9
1,475,010 + RALBFv3_RS21190 0.79 -0.1
1,475,010 + RALBFv3_RS21190 0.79 -0.0
1,475,011 - RALBFv3_RS21190 0.79 -0.1
1,475,011 - RALBFv3_RS21190 0.79 -0.6
1,475,014 - RALBFv3_RS21190 0.79 -0.4
1,475,025 + RALBFv3_RS21190 0.80 -0.1
1,475,025 + RALBFv3_RS21190 0.80 +0.1
1,475,025 + RALBFv3_RS21190 0.80 +0.8
1,475,025 + RALBFv3_RS21190 0.80 -0.5
1,475,025 + RALBFv3_RS21190 0.80 +0.3
1,475,026 - RALBFv3_RS21190 0.80 -0.5
1,475,040 + RALBFv3_RS21190 0.81 -1.0
1,475,064 + RALBFv3_RS21190 0.82 +0.5
1,475,065 - RALBFv3_RS21190 0.82 +1.3
1,475,118 + RALBFv3_RS21190 0.85 -0.4
1,475,118 + RALBFv3_RS21190 0.85 -1.8
1,475,118 + RALBFv3_RS21190 0.85 -0.8
1,475,118 + RALBFv3_RS21190 0.85 -1.4
1,475,118 + RALBFv3_RS21190 0.85 +0.1
1,475,119 - RALBFv3_RS21190 0.85 -0.3
1,475,119 - RALBFv3_RS21190 0.85 +0.9
1,475,119 - RALBFv3_RS21190 0.85 -2.5
1,475,119 - RALBFv3_RS21190 0.85 -0.7
1,475,119 - RALBFv3_RS21190 0.85 +2.1
1,475,119 - RALBFv3_RS21190 0.85 -0.7
1,475,155 - RALBFv3_RS21190 0.87 -0.3
1,475,155 - RALBFv3_RS21190 0.87 +0.3
1,475,155 - RALBFv3_RS21190 0.87 -0.2
1,475,178 + RALBFv3_RS21190 0.89 -0.3
1,475,178 + RALBFv3_RS21190 0.89 -0.3
1,475,179 - RALBFv3_RS21190 0.89 -1.3
1,475,603 + RALBFv3_RS21195 0.65 +1.0
1,475,603 + RALBFv3_RS21195 0.65 +0.5
1,475,603 + RALBFv3_RS21195 0.65 -0.3
1,475,603 + RALBFv3_RS21195 0.65 -0.4
1,475,724 + +1.1
1,475,724 + +0.9
1,475,742 - +0.4
1,475,742 - +1.1
1,475,742 - -0.4
1,475,943 + RALBFv3_RS21200 0.17 -1.5
1,475,943 + RALBFv3_RS21200 0.17 -0.0
1,475,944 - RALBFv3_RS21200 0.18 -0.5
1,475,944 - RALBFv3_RS21200 0.18 -0.8
1,476,147 + RALBFv3_RS21200 0.34 +1.4
1,476,163 - RALBFv3_RS21200 0.35 -1.3
1,476,163 - RALBFv3_RS21200 0.35 +2.4
1,476,163 - RALBFv3_RS21200 0.35 -0.8
1,476,252 + RALBFv3_RS21200 0.42 +1.5
1,476,436 - RALBFv3_RS21200 0.57 -0.1
1,476,726 + RALBFv3_RS21200 0.80 +0.6
1,476,726 + RALBFv3_RS21200 0.80 -2.2
1,476,726 + RALBFv3_RS21200 0.80 -1.5
1,476,727 - RALBFv3_RS21200 0.80 +0.2
1,476,727 - RALBFv3_RS21200 0.80 -1.0
1,476,727 - RALBFv3_RS21200 0.80 +0.8
1,476,727 - RALBFv3_RS21200 0.80 +0.3
1,476,730 + RALBFv3_RS21200 0.80 -0.3
1,477,031 + -1.2
1,477,031 + -0.9
1,477,031 + -0.4
1,477,031 + +0.0
1,477,032 - -1.9
1,477,337 + +0.7
1,477,446 - RALBFv3_RS21205 0.12 -1.3
1,477,485 + RALBFv3_RS21205 0.14 +0.9
1,477,486 - RALBFv3_RS21205 0.15 +1.5
1,477,538 + RALBFv3_RS21205 0.18 -2.0
1,477,538 + RALBFv3_RS21205 0.18 -0.3
1,477,553 + RALBFv3_RS21205 0.18 -1.9
1,477,554 - RALBFv3_RS21205 0.18 +0.7
1,477,554 - RALBFv3_RS21205 0.18 +0.2
1,477,554 - RALBFv3_RS21205 0.18 -0.6
1,477,554 - RALBFv3_RS21205 0.18 -1.4
1,477,713 - RALBFv3_RS21205 0.28 +0.6
1,477,847 + RALBFv3_RS21205 0.35 -0.1
1,477,847 + RALBFv3_RS21205 0.35 +0.0
1,477,847 + RALBFv3_RS21205 0.35 -1.1
1,477,847 + RALBFv3_RS21205 0.35 -0.8
1,477,847 + RALBFv3_RS21205 0.35 +0.1
1,477,848 - RALBFv3_RS21205 0.35 +2.4
1,477,848 - RALBFv3_RS21205 0.35 +1.8
1,477,938 + RALBFv3_RS21205 0.40 +1.8
1,477,938 + RALBFv3_RS21205 0.40 -0.1
1,477,938 + RALBFv3_RS21205 0.40 -0.9
1,477,938 + RALBFv3_RS21205 0.40 +0.5
1,477,939 - RALBFv3_RS21205 0.40 -1.7

Or see this region's nucleotide sequence