Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17625

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS17620 and RALBFv3_RS17625 are separated by 79 nucleotidesRALBFv3_RS17625 and RALBFv3_RS17630 overlap by 4 nucleotidesRALBFv3_RS17630 and RALBFv3_RS17635 overlap by 4 nucleotides RALBFv3_RS17620: RALBFv3_RS17620 - membrane protein, at 453,698 to 454,732 _RS17620 RALBFv3_RS17625: RALBFv3_RS17625 - DUF4178 domain-containing protein, at 454,812 to 456,260 _RS17625 RALBFv3_RS17630: RALBFv3_RS17630 - hypothetical protein, at 456,257 to 456,442 _RS17630 RALBFv3_RS17635: RALBFv3_RS17635 - adenosylmethionine decarboxylase, at 456,439 to 456,861 _RS17635 Position (kb) 454 455 456 457Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 453.932 kb on + strand, within RALBFv3_RS17620at 453.983 kb on + strand, within RALBFv3_RS17620at 453.983 kb on + strand, within RALBFv3_RS17620at 453.984 kb on - strand, within RALBFv3_RS17620at 453.984 kb on - strand, within RALBFv3_RS17620at 453.984 kb on - strand, within RALBFv3_RS17620at 453.984 kb on - strand, within RALBFv3_RS17620at 454.091 kb on + strand, within RALBFv3_RS17620at 454.092 kb on - strand, within RALBFv3_RS17620at 454.124 kb on + strand, within RALBFv3_RS17620at 454.125 kb on - strand, within RALBFv3_RS17620at 454.154 kb on + strand, within RALBFv3_RS17620at 454.154 kb on + strand, within RALBFv3_RS17620at 454.155 kb on - strand, within RALBFv3_RS17620at 454.155 kb on - strand, within RALBFv3_RS17620at 454.314 kb on - strand, within RALBFv3_RS17620at 454.314 kb on - strand, within RALBFv3_RS17620at 454.314 kb on - strand, within RALBFv3_RS17620at 454.747 kb on - strandat 454.874 kb on - strandat 454.965 kb on + strand, within RALBFv3_RS17625at 454.965 kb on + strand, within RALBFv3_RS17625at 454.999 kb on - strand, within RALBFv3_RS17625at 454.999 kb on - strand, within RALBFv3_RS17625at 455.044 kb on - strand, within RALBFv3_RS17625at 455.196 kb on + strand, within RALBFv3_RS17625at 455.197 kb on - strand, within RALBFv3_RS17625at 455.233 kb on + strand, within RALBFv3_RS17625at 455.233 kb on + strand, within RALBFv3_RS17625at 455.347 kb on - strand, within RALBFv3_RS17625at 455.373 kb on + strand, within RALBFv3_RS17625at 455.374 kb on - strand, within RALBFv3_RS17625at 455.731 kb on - strand, within RALBFv3_RS17625at 455.739 kb on + strand, within RALBFv3_RS17625at 455.739 kb on + strand, within RALBFv3_RS17625at 455.739 kb on + strand, within RALBFv3_RS17625at 455.739 kb on + strand, within RALBFv3_RS17625at 455.740 kb on - strand, within RALBFv3_RS17625at 455.880 kb on + strand, within RALBFv3_RS17625at 455.881 kb on - strand, within RALBFv3_RS17625at 455.898 kb on + strand, within RALBFv3_RS17625at 455.898 kb on + strand, within RALBFv3_RS17625at 455.898 kb on + strand, within RALBFv3_RS17625at 455.899 kb on - strand, within RALBFv3_RS17625at 456.102 kb on + strand, within RALBFv3_RS17625at 456.103 kb on - strand, within RALBFv3_RS17625at 456.309 kb on - strand, within RALBFv3_RS17630at 456.309 kb on - strand, within RALBFv3_RS17630at 456.354 kb on - strand, within RALBFv3_RS17630at 456.384 kb on - strand, within RALBFv3_RS17630at 456.714 kb on + strand, within RALBFv3_RS17635at 457.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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453,932 + RALBFv3_RS17620 0.23 +0.3
453,983 + RALBFv3_RS17620 0.28 +0.9
453,983 + RALBFv3_RS17620 0.28 +0.7
453,984 - RALBFv3_RS17620 0.28 +0.6
453,984 - RALBFv3_RS17620 0.28 -0.3
453,984 - RALBFv3_RS17620 0.28 +0.6
453,984 - RALBFv3_RS17620 0.28 -0.5
454,091 + RALBFv3_RS17620 0.38 -0.6
454,092 - RALBFv3_RS17620 0.38 -1.2
454,124 + RALBFv3_RS17620 0.41 +0.4
454,125 - RALBFv3_RS17620 0.41 +1.4
454,154 + RALBFv3_RS17620 0.44 -1.4
454,154 + RALBFv3_RS17620 0.44 +0.1
454,155 - RALBFv3_RS17620 0.44 -1.2
454,155 - RALBFv3_RS17620 0.44 -0.8
454,314 - RALBFv3_RS17620 0.60 +0.7
454,314 - RALBFv3_RS17620 0.60 +2.7
454,314 - RALBFv3_RS17620 0.60 +0.0
454,747 - -1.1
454,874 - -0.4
454,965 + RALBFv3_RS17625 0.11 +0.1
454,965 + RALBFv3_RS17625 0.11 -1.1
454,999 - RALBFv3_RS17625 0.13 -0.1
454,999 - RALBFv3_RS17625 0.13 +5.2
455,044 - RALBFv3_RS17625 0.16 +0.2
455,196 + RALBFv3_RS17625 0.27 -0.4
455,197 - RALBFv3_RS17625 0.27 -0.5
455,233 + RALBFv3_RS17625 0.29 -0.1
455,233 + RALBFv3_RS17625 0.29 +0.6
455,347 - RALBFv3_RS17625 0.37 -0.9
455,373 + RALBFv3_RS17625 0.39 -0.4
455,374 - RALBFv3_RS17625 0.39 -0.6
455,731 - RALBFv3_RS17625 0.63 -0.2
455,739 + RALBFv3_RS17625 0.64 -0.8
455,739 + RALBFv3_RS17625 0.64 +0.3
455,739 + RALBFv3_RS17625 0.64 -1.0
455,739 + RALBFv3_RS17625 0.64 +0.6
455,740 - RALBFv3_RS17625 0.64 -0.0
455,880 + RALBFv3_RS17625 0.74 -0.6
455,881 - RALBFv3_RS17625 0.74 -2.2
455,898 + RALBFv3_RS17625 0.75 +0.2
455,898 + RALBFv3_RS17625 0.75 -1.0
455,898 + RALBFv3_RS17625 0.75 +0.3
455,899 - RALBFv3_RS17625 0.75 -0.2
456,102 + RALBFv3_RS17625 0.89 -0.0
456,103 - RALBFv3_RS17625 0.89 -0.4
456,309 - RALBFv3_RS17630 0.28 -1.0
456,309 - RALBFv3_RS17630 0.28 -0.8
456,354 - RALBFv3_RS17630 0.52 -2.4
456,384 - RALBFv3_RS17630 0.68 -0.8
456,714 + RALBFv3_RS17635 0.65 -1.1
457,130 + +0.3

Or see this region's nucleotide sequence