Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17610 and RALBFv3_RS17615 are separated by 341 nucleotides RALBFv3_RS17615 and RALBFv3_RS17620 are separated by 41 nucleotides
RALBFv3_RS17610: RALBFv3_RS17610 - ABC transporter substrate-binding protein, at 451,666 to 452,925
_RS17610
RALBFv3_RS17615: RALBFv3_RS17615 - DUF350 domain-containing protein, at 453,267 to 453,656
_RS17615
RALBFv3_RS17620: RALBFv3_RS17620 - membrane protein, at 453,698 to 454,732
_RS17620
Position (kb) 453
454 Strain fitness (log2 ratio) -1
0
1
2 at 452.369 kb on + strand, within RALBFv3_RS17610 at 452.369 kb on + strand, within RALBFv3_RS17610 at 452.370 kb on - strand, within RALBFv3_RS17610 at 452.772 kb on - strand, within RALBFv3_RS17610 at 453.006 kb on + strand at 453.007 kb on - strand at 453.026 kb on + strand at 453.026 kb on + strand at 453.072 kb on + strand at 453.218 kb on - strand at 453.220 kb on - strand at 453.288 kb on + strand at 453.289 kb on - strand at 453.342 kb on + strand, within RALBFv3_RS17615 at 453.343 kb on - strand, within RALBFv3_RS17615 at 453.343 kb on - strand, within RALBFv3_RS17615 at 453.360 kb on + strand, within RALBFv3_RS17615 at 453.361 kb on - strand, within RALBFv3_RS17615 at 453.932 kb on + strand, within RALBFv3_RS17620 at 453.983 kb on + strand, within RALBFv3_RS17620 at 453.983 kb on + strand, within RALBFv3_RS17620 at 453.984 kb on - strand, within RALBFv3_RS17620 at 453.984 kb on - strand, within RALBFv3_RS17620 at 453.984 kb on - strand, within RALBFv3_RS17620 at 453.984 kb on - strand, within RALBFv3_RS17620 at 454.091 kb on + strand, within RALBFv3_RS17620 at 454.092 kb on - strand, within RALBFv3_RS17620 at 454.124 kb on + strand, within RALBFv3_RS17620 at 454.125 kb on - strand, within RALBFv3_RS17620 at 454.154 kb on + strand, within RALBFv3_RS17620 at 454.154 kb on + strand, within RALBFv3_RS17620 at 454.155 kb on - strand, within RALBFv3_RS17620 at 454.155 kb on - strand, within RALBFv3_RS17620 at 454.314 kb on - strand, within RALBFv3_RS17620 at 454.314 kb on - strand, within RALBFv3_RS17620 at 454.314 kb on - strand, within RALBFv3_RS17620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 452,369 + RALBFv3_RS17610 0.56 +0.2 452,369 + RALBFv3_RS17610 0.56 -0.5 452,370 - RALBFv3_RS17610 0.56 +0.4 452,772 - RALBFv3_RS17610 0.88 +0.4 453,006 + -0.5 453,007 - -1.0 453,026 + +0.3 453,026 + -0.6 453,072 + -0.3 453,218 - -0.3 453,220 - -1.1 453,288 + +1.5 453,289 - -0.1 453,342 + RALBFv3_RS17615 0.19 -0.7 453,343 - RALBFv3_RS17615 0.19 +0.1 453,343 - RALBFv3_RS17615 0.19 +0.1 453,360 + RALBFv3_RS17615 0.24 +0.6 453,361 - RALBFv3_RS17615 0.24 +0.7 453,932 + RALBFv3_RS17620 0.23 +0.3 453,983 + RALBFv3_RS17620 0.28 +0.9 453,983 + RALBFv3_RS17620 0.28 +0.7 453,984 - RALBFv3_RS17620 0.28 +0.6 453,984 - RALBFv3_RS17620 0.28 -0.3 453,984 - RALBFv3_RS17620 0.28 +0.6 453,984 - RALBFv3_RS17620 0.28 -0.5 454,091 + RALBFv3_RS17620 0.38 -0.6 454,092 - RALBFv3_RS17620 0.38 -1.2 454,124 + RALBFv3_RS17620 0.41 +0.4 454,125 - RALBFv3_RS17620 0.41 +1.4 454,154 + RALBFv3_RS17620 0.44 -1.4 454,154 + RALBFv3_RS17620 0.44 +0.1 454,155 - RALBFv3_RS17620 0.44 -1.2 454,155 - RALBFv3_RS17620 0.44 -0.8 454,314 - RALBFv3_RS17620 0.60 +0.7 454,314 - RALBFv3_RS17620 0.60 +2.7 454,314 - RALBFv3_RS17620 0.60 +0.0
Or see this region's nucleotide sequence