Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17210 and RALBFv3_RS17215 are separated by 1 nucleotides RALBFv3_RS17215 and RALBFv3_RS17220 overlap by 8 nucleotides
RALBFv3_RS17210: RALBFv3_RS17210 - ABC transporter permease, at 348,171 to 349,433
_RS17210
RALBFv3_RS17215: RALBFv3_RS17215 - ABC transporter ATP-binding protein, at 349,435 to 350,235
_RS17215
RALBFv3_RS17220: RALBFv3_RS17220 - ABC transporter ATP-binding protein, at 350,228 to 351,586
_RS17220
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 348.554 kb on + strand, within RALBFv3_RS17210 at 348.555 kb on - strand, within RALBFv3_RS17210 at 348.556 kb on + strand, within RALBFv3_RS17210 at 348.556 kb on + strand, within RALBFv3_RS17210 at 348.557 kb on - strand, within RALBFv3_RS17210 at 348.557 kb on - strand, within RALBFv3_RS17210 at 348.751 kb on + strand, within RALBFv3_RS17210 at 348.751 kb on + strand, within RALBFv3_RS17210 at 348.751 kb on + strand, within RALBFv3_RS17210 at 348.808 kb on + strand, within RALBFv3_RS17210 at 348.809 kb on - strand, within RALBFv3_RS17210 at 348.809 kb on - strand, within RALBFv3_RS17210 at 348.819 kb on + strand, within RALBFv3_RS17210 at 348.819 kb on + strand, within RALBFv3_RS17210 at 348.820 kb on - strand, within RALBFv3_RS17210 at 348.820 kb on - strand, within RALBFv3_RS17210 at 348.876 kb on - strand, within RALBFv3_RS17210 at 349.845 kb on - strand, within RALBFv3_RS17215 at 349.988 kb on + strand, within RALBFv3_RS17215 at 350.599 kb on + strand, within RALBFv3_RS17220 at 350.976 kb on - strand, within RALBFv3_RS17220 at 350.976 kb on - strand, within RALBFv3_RS17220 at 351.112 kb on - strand, within RALBFv3_RS17220 at 351.112 kb on - strand, within RALBFv3_RS17220 at 351.195 kb on + strand, within RALBFv3_RS17220 at 351.196 kb on - strand, within RALBFv3_RS17220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 348,554 + RALBFv3_RS17210 0.30 +0.4 348,555 - RALBFv3_RS17210 0.30 +0.5 348,556 + RALBFv3_RS17210 0.30 -0.2 348,556 + RALBFv3_RS17210 0.30 -0.3 348,557 - RALBFv3_RS17210 0.31 -1.1 348,557 - RALBFv3_RS17210 0.31 -1.3 348,751 + RALBFv3_RS17210 0.46 -1.0 348,751 + RALBFv3_RS17210 0.46 +0.7 348,751 + RALBFv3_RS17210 0.46 -1.2 348,808 + RALBFv3_RS17210 0.50 -0.9 348,809 - RALBFv3_RS17210 0.51 -0.2 348,809 - RALBFv3_RS17210 0.51 +0.5 348,819 + RALBFv3_RS17210 0.51 +2.1 348,819 + RALBFv3_RS17210 0.51 -0.9 348,820 - RALBFv3_RS17210 0.51 -0.5 348,820 - RALBFv3_RS17210 0.51 +0.9 348,876 - RALBFv3_RS17210 0.56 -0.4 349,845 - RALBFv3_RS17215 0.51 -0.7 349,988 + RALBFv3_RS17215 0.69 +5.8 350,599 + RALBFv3_RS17220 0.27 +1.2 350,976 - RALBFv3_RS17220 0.55 -0.7 350,976 - RALBFv3_RS17220 0.55 -0.5 351,112 - RALBFv3_RS17220 0.65 +0.4 351,112 - RALBFv3_RS17220 0.65 +1.9 351,195 + RALBFv3_RS17220 0.71 -0.2 351,196 - RALBFv3_RS17220 0.71 +1.3
Or see this region's nucleotide sequence