Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17145 and RALBFv3_RS17150 are separated by 60 nucleotides RALBFv3_RS17150 and RALBFv3_RS17155 are separated by 185 nucleotides
RALBFv3_RS17145: RALBFv3_RS17145 - aldo/keto reductase, at 335,940 to 336,944
_RS17145
RALBFv3_RS17150: RALBFv3_RS17150 - carboxymuconolactone decarboxylase family protein, at 337,005 to 337,331
_RS17150
RALBFv3_RS17155: RALBFv3_RS17155 - LysR family transcriptional regulator, at 337,517 to 338,410
_RS17155
Position (kb) 337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.073 kb on + strand, within RALBFv3_RS17145 at 336.074 kb on - strand, within RALBFv3_RS17145 at 336.074 kb on - strand, within RALBFv3_RS17145 at 336.074 kb on - strand, within RALBFv3_RS17145 at 336.300 kb on + strand, within RALBFv3_RS17145 at 336.301 kb on + strand, within RALBFv3_RS17145 at 336.302 kb on - strand, within RALBFv3_RS17145 at 336.337 kb on + strand, within RALBFv3_RS17145 at 336.337 kb on + strand, within RALBFv3_RS17145 at 336.338 kb on - strand, within RALBFv3_RS17145 at 336.358 kb on + strand, within RALBFv3_RS17145 at 336.358 kb on + strand, within RALBFv3_RS17145 at 336.359 kb on - strand, within RALBFv3_RS17145 at 336.413 kb on - strand, within RALBFv3_RS17145 at 336.413 kb on - strand, within RALBFv3_RS17145 at 336.511 kb on + strand, within RALBFv3_RS17145 at 336.512 kb on - strand, within RALBFv3_RS17145 at 336.595 kb on + strand, within RALBFv3_RS17145 at 336.595 kb on + strand, within RALBFv3_RS17145 at 336.595 kb on + strand, within RALBFv3_RS17145 at 336.595 kb on + strand, within RALBFv3_RS17145 at 336.596 kb on - strand, within RALBFv3_RS17145 at 336.596 kb on - strand, within RALBFv3_RS17145 at 336.596 kb on - strand, within RALBFv3_RS17145 at 336.610 kb on + strand, within RALBFv3_RS17145 at 336.611 kb on - strand, within RALBFv3_RS17145 at 336.611 kb on - strand, within RALBFv3_RS17145 at 336.611 kb on - strand, within RALBFv3_RS17145 at 336.788 kb on - strand, within RALBFv3_RS17145 at 336.788 kb on - strand, within RALBFv3_RS17145 at 336.788 kb on - strand, within RALBFv3_RS17145 at 336.931 kb on + strand at 336.931 kb on + strand at 337.075 kb on + strand, within RALBFv3_RS17150 at 337.075 kb on + strand, within RALBFv3_RS17150 at 337.171 kb on + strand, within RALBFv3_RS17150 at 337.172 kb on - strand, within RALBFv3_RS17150 at 337.266 kb on - strand, within RALBFv3_RS17150 at 337.267 kb on + strand, within RALBFv3_RS17150 at 337.410 kb on - strand at 337.410 kb on - strand at 337.410 kb on - strand at 337.431 kb on - strand at 337.440 kb on + strand at 337.455 kb on + strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.584 kb on + strand at 337.585 kb on - strand at 337.587 kb on + strand at 337.664 kb on + strand, within RALBFv3_RS17155 at 337.664 kb on + strand, within RALBFv3_RS17155 at 337.665 kb on - strand, within RALBFv3_RS17155 at 337.683 kb on + strand, within RALBFv3_RS17155 at 337.683 kb on + strand, within RALBFv3_RS17155 at 337.683 kb on + strand, within RALBFv3_RS17155 at 337.683 kb on + strand, within RALBFv3_RS17155 at 337.684 kb on - strand at 337.684 kb on - strand, within RALBFv3_RS17155 at 337.684 kb on - strand, within RALBFv3_RS17155 at 337.725 kb on + strand, within RALBFv3_RS17155 at 337.725 kb on + strand, within RALBFv3_RS17155 at 337.726 kb on - strand, within RALBFv3_RS17155 at 337.800 kb on + strand, within RALBFv3_RS17155 at 337.800 kb on + strand, within RALBFv3_RS17155 at 337.800 kb on + strand, within RALBFv3_RS17155 at 337.801 kb on - strand, within RALBFv3_RS17155 at 337.801 kb on - strand, within RALBFv3_RS17155 at 337.890 kb on + strand, within RALBFv3_RS17155 at 337.990 kb on - strand, within RALBFv3_RS17155 at 338.019 kb on + strand, within RALBFv3_RS17155 at 338.052 kb on + strand, within RALBFv3_RS17155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 336,073 + RALBFv3_RS17145 0.13 -1.3 336,074 - RALBFv3_RS17145 0.13 -1.1 336,074 - RALBFv3_RS17145 0.13 +0.6 336,074 - RALBFv3_RS17145 0.13 +0.6 336,300 + RALBFv3_RS17145 0.36 +0.2 336,301 + RALBFv3_RS17145 0.36 -0.3 336,302 - RALBFv3_RS17145 0.36 -0.5 336,337 + RALBFv3_RS17145 0.40 +0.6 336,337 + RALBFv3_RS17145 0.40 +0.9 336,338 - RALBFv3_RS17145 0.40 +0.2 336,358 + RALBFv3_RS17145 0.42 +0.5 336,358 + RALBFv3_RS17145 0.42 -0.2 336,359 - RALBFv3_RS17145 0.42 -0.5 336,413 - RALBFv3_RS17145 0.47 +0.9 336,413 - RALBFv3_RS17145 0.47 -1.1 336,511 + RALBFv3_RS17145 0.57 +0.7 336,512 - RALBFv3_RS17145 0.57 +0.9 336,595 + RALBFv3_RS17145 0.65 -0.3 336,595 + RALBFv3_RS17145 0.65 -0.7 336,595 + RALBFv3_RS17145 0.65 -0.6 336,595 + RALBFv3_RS17145 0.65 +0.3 336,596 - RALBFv3_RS17145 0.65 -0.8 336,596 - RALBFv3_RS17145 0.65 +0.8 336,596 - RALBFv3_RS17145 0.65 -0.4 336,610 + RALBFv3_RS17145 0.67 +0.4 336,611 - RALBFv3_RS17145 0.67 +0.2 336,611 - RALBFv3_RS17145 0.67 +0.3 336,611 - RALBFv3_RS17145 0.67 -0.8 336,788 - RALBFv3_RS17145 0.84 -0.3 336,788 - RALBFv3_RS17145 0.84 -0.1 336,788 - RALBFv3_RS17145 0.84 +1.5 336,931 + -2.5 336,931 + -0.0 337,075 + RALBFv3_RS17150 0.21 +0.8 337,075 + RALBFv3_RS17150 0.21 -1.5 337,171 + RALBFv3_RS17150 0.51 +1.1 337,172 - RALBFv3_RS17150 0.51 -1.2 337,266 - RALBFv3_RS17150 0.80 +0.3 337,267 + RALBFv3_RS17150 0.80 -1.1 337,410 - -1.2 337,410 - -0.7 337,410 - +0.4 337,431 - -0.8 337,440 + +1.5 337,455 + +1.4 337,456 - +1.0 337,456 - +0.4 337,584 + +2.0 337,585 - +0.9 337,587 + -0.3 337,664 + RALBFv3_RS17155 0.16 +0.6 337,664 + RALBFv3_RS17155 0.16 +2.6 337,665 - RALBFv3_RS17155 0.17 -1.1 337,683 + RALBFv3_RS17155 0.19 +0.2 337,683 + RALBFv3_RS17155 0.19 -0.1 337,683 + RALBFv3_RS17155 0.19 -0.2 337,683 + RALBFv3_RS17155 0.19 +1.1 337,684 - +1.1 337,684 - RALBFv3_RS17155 0.19 +1.0 337,684 - RALBFv3_RS17155 0.19 -1.2 337,725 + RALBFv3_RS17155 0.23 -0.7 337,725 + RALBFv3_RS17155 0.23 -0.5 337,726 - RALBFv3_RS17155 0.23 +0.7 337,800 + RALBFv3_RS17155 0.32 -1.3 337,800 + RALBFv3_RS17155 0.32 -0.9 337,800 + RALBFv3_RS17155 0.32 -0.4 337,801 - RALBFv3_RS17155 0.32 +1.5 337,801 - RALBFv3_RS17155 0.32 -1.0 337,890 + RALBFv3_RS17155 0.42 +1.1 337,990 - RALBFv3_RS17155 0.53 +1.4 338,019 + RALBFv3_RS17155 0.56 +0.9 338,052 + RALBFv3_RS17155 0.60 +0.2
Or see this region's nucleotide sequence