Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15335

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15330 and RALBFv3_RS15335 are separated by 131 nucleotidesRALBFv3_RS15335 and RALBFv3_RS15340 are separated by 341 nucleotidesRALBFv3_RS15340 and RALBFv3_RS15345 are separated by 70 nucleotides RALBFv3_RS15330: RALBFv3_RS15330 - adenylosuccinate synthase, at 3,337,558 to 3,338,898 _RS15330 RALBFv3_RS15335: RALBFv3_RS15335 - phosphoribosyltransferase, at 3,339,030 to 3,339,611 _RS15335 RALBFv3_RS15340: RALBFv3_RS15340 - tRNA-Leu, at 3,339,953 to 3,340,037 _RS15340 RALBFv3_RS15345: RALBFv3_RS15345 - ribonuclease R, at 3,340,108 to 3,342,699 _RS15345 Position (kb) 3339 3340Strain fitness (log2 ratio) -1 0 1at 3339.199 kb on - strand, within RALBFv3_RS15335at 3339.514 kb on - strand, within RALBFv3_RS15335at 3340.326 kb on + strandat 3340.466 kb on - strand, within RALBFv3_RS15345

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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3,339,199 - RALBFv3_RS15335 0.29 -1.0
3,339,514 - RALBFv3_RS15335 0.83 -1.7
3,340,326 + +0.2
3,340,466 - RALBFv3_RS15345 0.14 +1.0

Or see this region's nucleotide sequence