Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS13945 and RALBFv3_RS13950 are separated by 64 nucleotides RALBFv3_RS13950 and RALBFv3_RS13955 are separated by 3 nucleotides RALBFv3_RS13955 and RALBFv3_RS13960 overlap by 4 nucleotides
RALBFv3_RS13945: RALBFv3_RS13945 - peptidase M48, at 3,049,876 to 3,051,132
_RS13945
RALBFv3_RS13950: RALBFv3_RS13950 - oligoribonuclease, at 3,051,197 to 3,051,856
_RS13950
RALBFv3_RS13955: RALBFv3_RS13955 - molybdopterin adenylyltransferase, at 3,051,860 to 3,052,498
_RS13955
RALBFv3_RS13960: RALBFv3_RS13960 - DUF615 domain-containing protein, at 3,052,495 to 3,053,121
_RS13960
Position (kb) 3051
3052 Strain fitness (log2 ratio) -1
0
1 at 3050.491 kb on - strand, within RALBFv3_RS13945 at 3050.765 kb on + strand, within RALBFv3_RS13945 at 3050.966 kb on + strand, within RALBFv3_RS13945 at 3050.967 kb on - strand, within RALBFv3_RS13945 at 3051.936 kb on + strand, within RALBFv3_RS13955 at 3051.936 kb on + strand, within RALBFv3_RS13955 at 3052.407 kb on + strand, within RALBFv3_RS13955 at 3052.408 kb on - strand, within RALBFv3_RS13955 at 3052.789 kb on + strand, within RALBFv3_RS13960 at 3052.852 kb on - strand, within RALBFv3_RS13960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 3,050,491 - RALBFv3_RS13945 0.49 -1.4 3,050,765 + RALBFv3_RS13945 0.71 -1.5 3,050,966 + RALBFv3_RS13945 0.87 -0.3 3,050,967 - RALBFv3_RS13945 0.87 -0.8 3,051,936 + RALBFv3_RS13955 0.12 -0.1 3,051,936 + RALBFv3_RS13955 0.12 +0.4 3,052,407 + RALBFv3_RS13955 0.86 +0.4 3,052,408 - RALBFv3_RS13955 0.86 -1.1 3,052,789 + RALBFv3_RS13960 0.47 -0.3 3,052,852 - RALBFv3_RS13960 0.57 +0.3
Or see this region's nucleotide sequence