Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS10470

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10465 and RALBFv3_RS10470 are separated by 40 nucleotidesRALBFv3_RS10470 and RALBFv3_RS10475 overlap by 4 nucleotidesRALBFv3_RS10475 and RALBFv3_RS10480 are separated by 44 nucleotides RALBFv3_RS10465: RALBFv3_RS10465 - biotin synthase BioB, at 2,328,024 to 2,329,103 _RS10465 RALBFv3_RS10470: RALBFv3_RS10470 - enoyl-CoA hydratase, at 2,329,144 to 2,329,938 _RS10470 RALBFv3_RS10475: RALBFv3_RS10475 - dienelactone hydrolase family protein, at 2,329,935 to 2,330,870 _RS10475 RALBFv3_RS10480: RALBFv3_RS10480 - methylcrotonoyl-CoA carboxylase, at 2,330,915 to 2,332,522 _RS10480 Position (kb) 2329 2330Strain fitness (log2 ratio) -1 0 1 2 3 4at 2328.535 kb on + strand, within RALBFv3_RS10465at 2328.535 kb on + strand, within RALBFv3_RS10465at 2328.536 kb on - strand, within RALBFv3_RS10465at 2328.562 kb on + strand, within RALBFv3_RS10465at 2328.562 kb on + strand, within RALBFv3_RS10465at 2328.595 kb on + strand, within RALBFv3_RS10465at 2328.596 kb on - strand, within RALBFv3_RS10465at 2328.596 kb on - strand, within RALBFv3_RS10465at 2328.599 kb on - strand, within RALBFv3_RS10465at 2328.868 kb on + strand, within RALBFv3_RS10465at 2328.869 kb on - strand, within RALBFv3_RS10465at 2329.451 kb on + strand, within RALBFv3_RS10470at 2329.452 kb on - strand, within RALBFv3_RS10470at 2329.490 kb on + strand, within RALBFv3_RS10470at 2329.605 kb on - strand, within RALBFv3_RS10470at 2329.605 kb on - strand, within RALBFv3_RS10470at 2329.605 kb on - strand, within RALBFv3_RS10470at 2329.605 kb on - strand, within RALBFv3_RS10470at 2330.126 kb on - strand, within RALBFv3_RS10475at 2330.161 kb on + strand, within RALBFv3_RS10475at 2330.162 kb on - strand, within RALBFv3_RS10475at 2330.200 kb on + strand, within RALBFv3_RS10475at 2330.201 kb on - strand, within RALBFv3_RS10475at 2330.236 kb on + strand, within RALBFv3_RS10475at 2330.428 kb on + strand, within RALBFv3_RS10475at 2330.429 kb on - strand, within RALBFv3_RS10475at 2330.429 kb on - strand, within RALBFv3_RS10475at 2330.446 kb on + strand, within RALBFv3_RS10475at 2330.446 kb on + strand, within RALBFv3_RS10475at 2330.447 kb on - strand, within RALBFv3_RS10475at 2330.447 kb on - strand, within RALBFv3_RS10475at 2330.447 kb on - strand, within RALBFv3_RS10475at 2330.516 kb on + strand, within RALBFv3_RS10475at 2330.516 kb on + strand, within RALBFv3_RS10475at 2330.519 kb on - strand, within RALBFv3_RS10475at 2330.519 kb on - strand, within RALBFv3_RS10475at 2330.569 kb on + strand, within RALBFv3_RS10475at 2330.569 kb on + strand, within RALBFv3_RS10475at 2330.569 kb on + strand, within RALBFv3_RS10475at 2330.605 kb on + strand, within RALBFv3_RS10475at 2330.916 kb on + strandat 2330.917 kb on - strandat 2330.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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2,328,535 + RALBFv3_RS10465 0.47 -0.4
2,328,535 + RALBFv3_RS10465 0.47 +3.0
2,328,536 - RALBFv3_RS10465 0.47 +0.5
2,328,562 + RALBFv3_RS10465 0.50 +0.2
2,328,562 + RALBFv3_RS10465 0.50 -0.4
2,328,595 + RALBFv3_RS10465 0.53 +0.1
2,328,596 - RALBFv3_RS10465 0.53 +4.0
2,328,596 - RALBFv3_RS10465 0.53 +0.3
2,328,599 - RALBFv3_RS10465 0.53 +0.4
2,328,868 + RALBFv3_RS10465 0.78 +0.4
2,328,869 - RALBFv3_RS10465 0.78 -0.3
2,329,451 + RALBFv3_RS10470 0.39 +0.9
2,329,452 - RALBFv3_RS10470 0.39 +0.3
2,329,490 + RALBFv3_RS10470 0.44 +0.5
2,329,605 - RALBFv3_RS10470 0.58 -0.3
2,329,605 - RALBFv3_RS10470 0.58 +1.7
2,329,605 - RALBFv3_RS10470 0.58 -0.5
2,329,605 - RALBFv3_RS10470 0.58 -0.4
2,330,126 - RALBFv3_RS10475 0.20 +1.2
2,330,161 + RALBFv3_RS10475 0.24 +1.6
2,330,162 - RALBFv3_RS10475 0.24 +0.7
2,330,200 + RALBFv3_RS10475 0.28 -0.8
2,330,201 - RALBFv3_RS10475 0.28 -0.9
2,330,236 + RALBFv3_RS10475 0.32 +2.1
2,330,428 + RALBFv3_RS10475 0.53 +0.2
2,330,429 - RALBFv3_RS10475 0.53 +0.7
2,330,429 - RALBFv3_RS10475 0.53 -0.4
2,330,446 + RALBFv3_RS10475 0.55 +0.6
2,330,446 + RALBFv3_RS10475 0.55 +0.4
2,330,447 - RALBFv3_RS10475 0.55 -0.5
2,330,447 - RALBFv3_RS10475 0.55 -1.3
2,330,447 - RALBFv3_RS10475 0.55 -1.0
2,330,516 + RALBFv3_RS10475 0.62 +1.2
2,330,516 + RALBFv3_RS10475 0.62 -0.8
2,330,519 - RALBFv3_RS10475 0.62 -1.2
2,330,519 - RALBFv3_RS10475 0.62 +0.9
2,330,569 + RALBFv3_RS10475 0.68 +0.2
2,330,569 + RALBFv3_RS10475 0.68 -0.3
2,330,569 + RALBFv3_RS10475 0.68 +0.9
2,330,605 + RALBFv3_RS10475 0.72 -0.6
2,330,916 + +0.2
2,330,917 - -0.3
2,330,917 - -0.6

Or see this region's nucleotide sequence