Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06700 and RALBFv3_RS06705 are separated by 196 nucleotides RALBFv3_RS06705 and RALBFv3_RS06710 are separated by 29 nucleotides RALBFv3_RS06710 and RALBFv3_RS06715 are separated by 60 nucleotides
RALBFv3_RS06700: RALBFv3_RS06700 - LysR family transcriptional regulator, at 1,493,329 to 1,494,198
_RS06700
RALBFv3_RS06705: RALBFv3_RS06705 - tRNA-Thr, at 1,494,395 to 1,494,470
_RS06705
RALBFv3_RS06710: RALBFv3_RS06710 - ClpXP protease specificity-enhancing factor, at 1,494,500 to 1,495,000
_RS06710
RALBFv3_RS06715: RALBFv3_RS06715 - stringent starvation protein A, at 1,495,061 to 1,495,672
_RS06715
Position (kb) 1494
1495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1493.420 kb on + strand, within RALBFv3_RS06700 at 1493.424 kb on + strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.425 kb on - strand, within RALBFv3_RS06700 at 1493.610 kb on + strand, within RALBFv3_RS06700 at 1493.610 kb on + strand, within RALBFv3_RS06700 at 1493.804 kb on + strand, within RALBFv3_RS06700 at 1493.804 kb on + strand, within RALBFv3_RS06700 at 1493.804 kb on + strand, within RALBFv3_RS06700 at 1493.805 kb on - strand, within RALBFv3_RS06700 at 1493.805 kb on - strand, within RALBFv3_RS06700 at 1493.848 kb on - strand, within RALBFv3_RS06700 at 1494.035 kb on + strand, within RALBFv3_RS06700 at 1494.036 kb on - strand, within RALBFv3_RS06700 at 1494.036 kb on - strand, within RALBFv3_RS06700 at 1494.054 kb on - strand, within RALBFv3_RS06700 at 1494.054 kb on - strand, within RALBFv3_RS06700 at 1494.054 kb on - strand, within RALBFv3_RS06700 at 1494.197 kb on - strand at 1494.215 kb on + strand at 1494.216 kb on - strand at 1494.216 kb on - strand at 1494.276 kb on + strand at 1494.502 kb on - strand at 1494.686 kb on - strand, within RALBFv3_RS06710 at 1494.924 kb on + strand, within RALBFv3_RS06710 at 1494.924 kb on + strand, within RALBFv3_RS06710 at 1494.925 kb on - strand, within RALBFv3_RS06710 at 1494.925 kb on - strand, within RALBFv3_RS06710 at 1494.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,493,420 + RALBFv3_RS06700 0.10 +1.2 1,493,424 + RALBFv3_RS06700 0.11 +2.9 1,493,425 - RALBFv3_RS06700 0.11 +1.1 1,493,425 - RALBFv3_RS06700 0.11 -0.2 1,493,425 - RALBFv3_RS06700 0.11 +1.2 1,493,425 - RALBFv3_RS06700 0.11 -1.0 1,493,425 - RALBFv3_RS06700 0.11 -1.3 1,493,425 - RALBFv3_RS06700 0.11 -1.6 1,493,425 - RALBFv3_RS06700 0.11 -2.5 1,493,425 - RALBFv3_RS06700 0.11 -0.5 1,493,610 + RALBFv3_RS06700 0.32 -0.1 1,493,610 + RALBFv3_RS06700 0.32 +1.6 1,493,804 + RALBFv3_RS06700 0.55 -0.2 1,493,804 + RALBFv3_RS06700 0.55 -0.4 1,493,804 + RALBFv3_RS06700 0.55 +2.9 1,493,805 - RALBFv3_RS06700 0.55 -0.6 1,493,805 - RALBFv3_RS06700 0.55 -0.6 1,493,848 - RALBFv3_RS06700 0.60 -0.9 1,494,035 + RALBFv3_RS06700 0.81 +1.3 1,494,036 - RALBFv3_RS06700 0.81 -2.8 1,494,036 - RALBFv3_RS06700 0.81 -0.6 1,494,054 - RALBFv3_RS06700 0.83 +0.8 1,494,054 - RALBFv3_RS06700 0.83 -1.1 1,494,054 - RALBFv3_RS06700 0.83 -0.9 1,494,197 - +0.9 1,494,215 + +0.7 1,494,216 - +1.6 1,494,216 - -0.3 1,494,276 + -0.7 1,494,502 - -1.2 1,494,686 - RALBFv3_RS06710 0.37 +0.0 1,494,924 + RALBFv3_RS06710 0.85 -0.3 1,494,924 + RALBFv3_RS06710 0.85 -0.2 1,494,925 - RALBFv3_RS06710 0.85 -1.9 1,494,925 - RALBFv3_RS06710 0.85 -0.7 1,494,958 - -0.4
Or see this region's nucleotide sequence